Beyond biosecurity by taxonomic lists: Lessons, challenges, and opportunities

P Millett, T Alexanian, KR Brink, SR Carter… - Health …, 2023 - liebertpub.com
Taxonomic lists—that is, lists that give a set of species (eg, Yersinia pestis) or broader
taxonomic groups (eg, SARS-related coronavirus) to be regulated—are a common tool used …

Meta-analysis of the Ralstonia solanacearum species complex (RSSC) based on comparative evolutionary genomics and reverse ecology

P Sharma, MA Johnson, R Mazloom… - Microbial …, 2022 - microbiologyresearch.org
Ralstonia solanacearum species complex (RSSC) strains are bacteria that colonize plant
xylem tissue and cause vascular wilt diseases. However, individual strains vary in host …

A Dual Barcoding Approach to Bacterial Strain Nomenclature: Genomic Taxonomy of Klebsiella pneumoniae Strains

M Hennart, J Guglielmini, S Bridel… - Molecular Biology …, 2022 - academic.oup.com
Sublineages (SLs) within microbial species can differ widely in their ecology and
pathogenicity, and their precise definition is important in basic research and for industrial or …

[HTML][HTML] Release LTP_12_2020, featuring a new ARB alignment and improved 16S rRNA tree for prokaryotic type strains

W Ludwig, T Viver, R Westram, JF Gago… - Systematic and Applied …, 2021 - Elsevier
The new release of the All-Species Living Tree Project (LTP) represents an important step
forward in the reconstruction of 16S rRNA gene phylogenies, since we not only provide an …

Molecular epidemiology of carbapenemase-producing Klebsiella pneumoniae in Gauteng South Africa

KT Salvador-Oke, JDD Pitout, G Peirano… - Scientific Reports, 2024 - nature.com
Klebsiella pneumoniae multidrug-resistant (MDR) high-risk clones drive the spread of
antimicrobial resistance (AMR) associated infections, resulting in limited therapeutic options …

A community-curated DokuWiki resource on diagnostics, diversity, pathogenicity, and genetic control of xanthomonads

J Costa, JF Pothier, E Bosis, J Boch… - Molecular Plant …, 2024 - Am Phytopath Society
Xanthomonads, including Xanthomonas and Xylella species, constitute a large and
significant group of economically and ecologically important plant pathogens. Up-to-date …

Genomic approaches to plant-pathogen epidemiology and diagnostics

AJ Weisberg, NJ Grünwald, EA Savory… - Annual Review of …, 2021 - annualreviews.org
Diseases have a significant cost to agriculture. Findings from analyses of whole-genome
sequences show great promise for informing strategies to mitigate risks from diseases …

Comparative Genomics of Barley-Infecting Xanthomonas translucens Shows Overall Genetic Similarity but Globally Distributed Virulence Factor Diversity

N Heiden, V Roman-Reyna, RD Curland… - …, 2023 - Am Phytopath Society
Xanthomonas translucens pv. translucens (Xtt) is a global barley patho-gen and a concern
for resistance breeding and regulation. Long-read whole genome sequences allow in-depth …

Investigating plant disease outbreaks with long-read metagenomics: sensitive detection and highly resolved phylogenetic reconstruction applied to Xylella fastidiosa

MA Johnson, H Liu, E Bush, P Sharma… - Microbial …, 2022 - microbiologyresearch.org
Early disease detection is a prerequisite for enacting effective interventions for disease
control. Strains of the bacterial plant pathogen Xylella fastidiosa have recurrently spread to …

[PDF][PDF] Genetic and Functional Diversity Help Explain Pathogenic, Weakly Pathogenic, and Commensal Lifestyles in the Genus Xanthomonas

MM Pena, R Bhandari, RM Bowers… - Genome Biology and …, 2024 - academic.oup.com
The genus Xanthomonas has been primarily studied for pathogenic interactions with plants.
However, besides host and tissue-specific pathogenic strains, this genus also comprises …