Beyond biosecurity by taxonomic lists: Lessons, challenges, and opportunities
P Millett, T Alexanian, KR Brink, SR Carter… - Health …, 2023 - liebertpub.com
Taxonomic lists—that is, lists that give a set of species (eg, Yersinia pestis) or broader
taxonomic groups (eg, SARS-related coronavirus) to be regulated—are a common tool used …
taxonomic groups (eg, SARS-related coronavirus) to be regulated—are a common tool used …
Meta-analysis of the Ralstonia solanacearum species complex (RSSC) based on comparative evolutionary genomics and reverse ecology
Ralstonia solanacearum species complex (RSSC) strains are bacteria that colonize plant
xylem tissue and cause vascular wilt diseases. However, individual strains vary in host …
xylem tissue and cause vascular wilt diseases. However, individual strains vary in host …
A Dual Barcoding Approach to Bacterial Strain Nomenclature: Genomic Taxonomy of Klebsiella pneumoniae Strains
Sublineages (SLs) within microbial species can differ widely in their ecology and
pathogenicity, and their precise definition is important in basic research and for industrial or …
pathogenicity, and their precise definition is important in basic research and for industrial or …
[HTML][HTML] Release LTP_12_2020, featuring a new ARB alignment and improved 16S rRNA tree for prokaryotic type strains
W Ludwig, T Viver, R Westram, JF Gago… - Systematic and Applied …, 2021 - Elsevier
The new release of the All-Species Living Tree Project (LTP) represents an important step
forward in the reconstruction of 16S rRNA gene phylogenies, since we not only provide an …
forward in the reconstruction of 16S rRNA gene phylogenies, since we not only provide an …
Molecular epidemiology of carbapenemase-producing Klebsiella pneumoniae in Gauteng South Africa
KT Salvador-Oke, JDD Pitout, G Peirano… - Scientific Reports, 2024 - nature.com
Klebsiella pneumoniae multidrug-resistant (MDR) high-risk clones drive the spread of
antimicrobial resistance (AMR) associated infections, resulting in limited therapeutic options …
antimicrobial resistance (AMR) associated infections, resulting in limited therapeutic options …
A community-curated DokuWiki resource on diagnostics, diversity, pathogenicity, and genetic control of xanthomonads
Xanthomonads, including Xanthomonas and Xylella species, constitute a large and
significant group of economically and ecologically important plant pathogens. Up-to-date …
significant group of economically and ecologically important plant pathogens. Up-to-date …
Genomic approaches to plant-pathogen epidemiology and diagnostics
Diseases have a significant cost to agriculture. Findings from analyses of whole-genome
sequences show great promise for informing strategies to mitigate risks from diseases …
sequences show great promise for informing strategies to mitigate risks from diseases …
Comparative Genomics of Barley-Infecting Xanthomonas translucens Shows Overall Genetic Similarity but Globally Distributed Virulence Factor Diversity
Xanthomonas translucens pv. translucens (Xtt) is a global barley patho-gen and a concern
for resistance breeding and regulation. Long-read whole genome sequences allow in-depth …
for resistance breeding and regulation. Long-read whole genome sequences allow in-depth …
Investigating plant disease outbreaks with long-read metagenomics: sensitive detection and highly resolved phylogenetic reconstruction applied to Xylella fastidiosa
Early disease detection is a prerequisite for enacting effective interventions for disease
control. Strains of the bacterial plant pathogen Xylella fastidiosa have recurrently spread to …
control. Strains of the bacterial plant pathogen Xylella fastidiosa have recurrently spread to …
[PDF][PDF] Genetic and Functional Diversity Help Explain Pathogenic, Weakly Pathogenic, and Commensal Lifestyles in the Genus Xanthomonas
The genus Xanthomonas has been primarily studied for pathogenic interactions with plants.
However, besides host and tissue-specific pathogenic strains, this genus also comprises …
However, besides host and tissue-specific pathogenic strains, this genus also comprises …