Rock, scissors, paper: How RNA structure informs function

SM Assmann, HL Chou, PC Bevilacqua - The Plant Cell, 2023 - academic.oup.com
RNA can fold back on itself to adopt a wide range of structures. These range from relatively
simple hairpins to intricate 3D folds and can be accompanied by regulatory interactions with …

R-loops: emerging key regulators in plants

D Zheng, M Li, Y Yang, R Huang… - Journal of Experimental …, 2023 - academic.oup.com
The biological implications of R-loops are increasingly receiving attention in plant biology.
Compared with recent progresses in humans, the studies of R-loops in plants are lagging …

Chromatin dynamics and RNA metabolism are double-edged swords for the maintenance of plant genome integrity

C Bergis-Ser, M Reji, D Latrasse, C Bergounioux… - Nature Plants, 2024 - nature.com
Maintenance of genome integrity is an essential process in all organisms. Mechanisms
avoiding the formation of DNA lesions or mutations are well described in animals because of …

Recent advances in the chromatin-based mechanism of FLOWERING LOCUS C repression through autonomous pathway genes

J Kyung, M Jeon, I Lee - Frontiers in Plant Science, 2022 - frontiersin.org
Proper timing of flowering, a phase transition from vegetative to reproductive development,
is crucial for plant fitness. The floral repressor FLOWERING LOCUS C (FLC) is the major …

Non-B DNA in plant genomes: prediction, map**, and emerging roles

L Ferrero, W Zhang, M Benhamed, M Crespi… - Trends in Plant Science, 2024 - cell.com
Regulating gene expression in plant development and environmental responses is vital for
mitigating the effects of climate change on crop growth and productivity. The eukaryotic …

R‐loops act as regulatory switches modulating transcription of COLD‐responsive genes in rice

Z He, M Li, X Pan, Y Peng, Y Shi, Q Han, M Shi… - New …, 2024 - Wiley Online Library
COLD is a major naturally occurring stress that usually causes complex symptoms and
severe yield loss in crops. R‐loops function in various cellular processes, including …

Genome-wide characterization of single-stranded DNA in rice

Y Peng, P Zhao, Z Li, N Mu, S Tao, Y Feng… - Plant …, 2024 - academic.oup.com
Single-stranded DNA (ssDNA) is essential for various DNA-templated processes in both
eukaryotes and prokaryotes. However, comprehensive characterizations of ssDNA still lag in …

[HTML][HTML] RNA Structure: Past, Future, and Gene Therapy Applications

WA Haseltine, K Hazel, R Patarca - International Journal of Molecular …, 2024 - mdpi.com
First believed to be a simple intermediary between the information encoded in
deoxyribonucleic acid and that functionally displayed in proteins, ribonucleic acid (RNA) is …

Ribonucleotide and R-Loop Damage in Plastid DNA and Mitochondrial DNA during Maize Development

D Tripathi, DJ Oldenburg, AJ Bendich - Plants, 2023 - mdpi.com
Although the temporary presence of ribonucleotides in DNA is normal, their persistence
represents a form of DNA damage. Here, we assess such damage and damage defense to …