Computational modeling, formal analysis, and tools for systems biology

E Bartocci, P Lió - PLoS computational biology, 2016 - journals.plos.org
As the amount of biological data in the public domain grows, so does the range of modeling
and analysis techniques employed in systems biology. In recent years, a number of …

Machine learning in arrhythmia and electrophysiology

NA Trayanova, DM Popescu, JK Shade - Circulation research, 2021 - ahajournals.org
Machine learning (ML), a branch of artificial intelligence, where machines learn from big
data, is at the crest of a technological wave of change swee** society. Cardiovascular …

Specification-based monitoring of cyber-physical systems: a survey on theory, tools and applications

E Bartocci, J Deshmukh, A Donzé, G Fainekos… - Lectures on Runtime …, 2018 - Springer
Abstract The term Cyber-Physical Systems (CPS) typically refers to engineered, physical
and biological systems monitored and/or controlled by an embedded computational core …

A decision tree approach to data classification using signal temporal logic

G Bombara, CI Vasile, F Penedo, H Yasuoka… - Proceedings of the 19th …, 2016 - dl.acm.org
This paper introduces a framework for inference of timed temporal logic properties from data.
The dataset is given as a finite set of pairs of finite-time system traces and labels, where the …

SpaTeL: a novel spatial-temporal logic and its applications to networked systems

I Haghighi, A Jones, Z Kong, E Bartocci… - Proceedings of the 18th …, 2015 - dl.acm.org
Networked dynamical systems are increasingly used as models for a variety of processes
ranging from robotic teams to collections of genetically engineered living cells. As the …

Offline and online learning of signal temporal logic formulae using decision trees

G Bombara, C Belta - ACM Transactions on Cyber-Physical Systems, 2021 - dl.acm.org
In this article, we focus on inferring high-level descriptions of a system from its execution
traces. Specifically, we consider a classification problem where system behaviors are …

Data-driven statistical learning of temporal logic properties

E Bartocci, L Bortolussi, G Sanguinetti - … on formal modeling and analysis of …, 2014 - Springer
We present a novel approach to learn logical formulae characterising the emergent
behaviour of a dynamical system from system observations. At a high level, the approach …

Spatial logics and model checking for medical imaging

F Banci Buonamici, G Belmonte, V Ciancia… - International Journal on …, 2020 - Springer
Recent research on spatial and spatio-temporal model checking provides novel image
analysis methodologies, rooted in logical methods for topological spaces. Medical imaging …

Monitoring mobile and spatially distributed cyber-physical systems

E Bartocci, L Bortolussi, M Loreti, L Nenzi - Proceedings of the 15th ACM …, 2017 - dl.acm.org
Cyber-Physical Systems (CPS) consist of collaborative, networked and tightly intertwined
computational (logical) and physical components, each operating at different spatial and …

[HTML][HTML] System design of stochastic models using robustness of temporal properties

E Bartocci, L Bortolussi, L Nenzi… - Theoretical Computer …, 2015 - Elsevier
Stochastic models such as Continuous-Time Markov Chains (CTMC) and Stochastic Hybrid
Automata (SHA) are powerful formalisms to model and to reason about the dynamics of …