Deciphering cell–cell interactions and communication from gene expression
Cell–cell interactions orchestrate organismal development, homeostasis and single-cell
functions. When cells do not properly interact or improperly decode molecular messages …
functions. When cells do not properly interact or improperly decode molecular messages …
Pathway and network analysis of cancer genomes
Nature methods, 2015 - nature.com
Genomic information on tumors from 50 cancer types cataloged by the International Cancer
Genome Consortium (ICGC) shows that only a few well-studied driver genes are frequently …
Genome Consortium (ICGC) shows that only a few well-studied driver genes are frequently …
g: Profiler—interoperable web service for functional enrichment analysis and gene identifier map** (2023 update)
Abstract g: Profiler is a reliable and up-to-date functional enrichment analysis tool that
supports various evidence types, identifier types and organisms. The toolset integrates many …
supports various evidence types, identifier types and organisms. The toolset integrates many …
[HTML][HTML] gprofiler2--an R package for gene list functional enrichment analysis and namespace conversion toolset g: Profiler
Abstract g: Profiler (https://biit. cs. ut. ee/gprofiler) is a widely used gene list functional
profiling and namespace conversion toolset that has been contributing to reproducible …
profiling and namespace conversion toolset that has been contributing to reproducible …
Integrative transcriptomic analysis of the amyotrophic lateral sclerosis spinal cord implicates glial activation and suggests new risk genes
Amyotrophic lateral sclerosis (ALS) is a progressively fatal neurodegenerative disease
affecting motor neurons in the brain and spinal cord. In this study, we investigated gene …
affecting motor neurons in the brain and spinal cord. In this study, we investigated gene …
g: Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update)
Biological data analysis often deals with lists of genes arising from various studies. The g:
Profiler toolset is widely used for finding biological categories enriched in gene lists …
Profiler toolset is widely used for finding biological categories enriched in gene lists …
Pathway enrichment analysis and visualization of omics data using g: Profiler, GSEA, Cytoscape and EnrichmentMap
Pathway enrichment analysis helps researchers gain mechanistic insight into gene lists
generated from genome-scale (omics) experiments. This method identifies biological …
generated from genome-scale (omics) experiments. This method identifies biological …
Potential roles of gut microbiome and metabolites in modulating ALS in mice
Amyotrophic lateral sclerosis (ALS) is a complex neurodegenerative disorder, in which the
clinical manifestations may be influenced by genetic and unknown environmental factors …
clinical manifestations may be influenced by genetic and unknown environmental factors …
[HTML][HTML] Transient naive reprogramming corrects hiPS cells functionally and epigenetically
Cells undergo a major epigenome reconfiguration when reprogrammed to human induced
pluripotent stem cells (hiPS cells). However, the epigenomes of hiPS cells and human …
pluripotent stem cells (hiPS cells). However, the epigenomes of hiPS cells and human …
Failure of human rhombic lip differentiation underlies medulloblastoma formation
Medulloblastoma (MB) comprises a group of heterogeneous paediatric embryonal
neoplasms of the hindbrain with strong links to early development of the hindbrain 1, 2, 3, 4 …
neoplasms of the hindbrain with strong links to early development of the hindbrain 1, 2, 3, 4 …