Drug design by pharmacophore and virtual screening approach

D Giordano, C Biancaniello, MA Argenio, A Facchiano - Pharmaceuticals, 2022 - mdpi.com
Computer-aided drug discovery techniques reduce the time and the costs needed to
develop novel drugs. Their relevance becomes more and more evident with the needs due …

An updated review of computer‐aided drug design and its application to COVID‐19

AB Gurung, MA Ali, J Lee, MA Farah… - BioMed research …, 2021 - Wiley Online Library
The recent outbreak of the deadly coronavirus disease 19 (COVID‐19) pandemic poses
serious health concerns around the world. The lack of approved drugs or vaccines continues …

PharmMapper 2017 update: a web server for potential drug target identification with a comprehensive target pharmacophore database

X Wang, Y Shen, S Wang, S Li, W Zhang… - Nucleic acids …, 2017 - academic.oup.com
The PharmMapper online tool is a web server for potential drug target identification by
reversed pharmacophore matching the query compound against an in-house …

Application of computational biology and artificial intelligence in drug design

Y Zhang, M Luo, P Wu, S Wu, TY Lee, C Bai - International journal of …, 2022 - mdpi.com
Traditional drug design requires a great amount of research time and developmental
expense. Booming computational approaches, including computational biology, computer …

Molecular docking and structure-based drug design strategies

LG Ferreira, RN Dos Santos, G Oliva, AD Andricopulo - Molecules, 2015 - mdpi.com
Pharmaceutical research has successfully incorporated a wealth of molecular modeling
methods, within a variety of drug discovery programs, to study complex biological and …

Next generation 3D pharmacophore modeling

D Schaller, D Šribar, T Noonan, L Deng… - Wiley …, 2020 - Wiley Online Library
Abstract 3D pharmacophore models are three‐dimensional ensembles of chemically
defined interactions of a ligand in its bioactive conformation. They represent an elegant way …

Computer aided drug design: success and limitations

M Hassan Baig, K Ahmad, S Roy… - Current …, 2016 - ingentaconnect.com
Over the last few decades, computer-aided drug design has emerged as a powerful
technique playing a crucial role in the development of new drug molecules. Structure-based …

Pharmit: interactive exploration of chemical space

J Sunseri, DR Koes - Nucleic acids research, 2016 - academic.oup.com
Abstract Pharmit (http://pharmit. csb. pitt. edu) provides an online, interactive environment for
the virtual screening of large compound databases using pharmacophores, molecular …

ZINCPharmer: pharmacophore search of the ZINC database

DR Koes, CJ Camacho - Nucleic acids research, 2012 - academic.oup.com
Abstract ZINCPharmer (http://zincpharmer. csb. pitt. edu) is an online interface for searching
the purchasable compounds of the ZINC database using the Pharmer pharmacophore …

De Novo Structure-Based Drug Design Using Deep Learning

SR Krishnan, N Bung, SR Vangala… - Journal of chemical …, 2021 - ACS Publications
In recent years, deep learning-based methods have emerged as promising tools for de novo
drug design. Most of these methods are ligand-based, where an initial target-specific ligand …