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Assessing and advancing the safety of CRISPR-Cas tools: from DNA to RNA editing
CRISPR-Cas gene editing has revolutionized experimental molecular biology over the past
decade and holds great promise for the treatment of human genetic diseases. Here we …
decade and holds great promise for the treatment of human genetic diseases. Here we …
A guide to computational methods for G-quadruplex prediction
E Puig Lombardi, A Londoño-Vallejo - Nucleic acids research, 2020 - academic.oup.com
Guanine-rich nucleic acids can fold into the non-B DNA or RNA structures called G-
quadruplexes (G4). Recent methodological developments have allowed the characterization …
quadruplexes (G4). Recent methodological developments have allowed the characterization …
Topoisomerase 1 prevents replication stress at R-loop-enriched transcription termination sites
R-loops have both positive and negative impacts on chromosome functions. To identify toxic
R-loops in the human genome, here, we map RNA: DNA hybrids, replication stress markers …
R-loops in the human genome, here, we map RNA: DNA hybrids, replication stress markers …
[HTML][HTML] Chemical insights into oxidative and nitrative modifications of DNA
This review focuses on DNA damage caused by a variety of oxidizing, alkylating, and
nitrating species, and it may play an important role in the pathophysiology of inflammation …
nitrating species, and it may play an important role in the pathophysiology of inflammation …
Studying DNA double-strand break repair: an ever-growing toolbox
AC Vítor, P Huertas, G Legube… - Frontiers in molecular …, 2020 - frontiersin.org
To ward off against the catastrophic consequences of persistent DNA double-strand breaks
(DSBs), eukaryotic cells have developed a set of complex signaling networks that detect …
(DSBs), eukaryotic cells have developed a set of complex signaling networks that detect …
[HTML][HTML] Ionizing radiation and complex DNA damage: from prediction to detection challenges and biological significance
Biological responses to ionizing radiation (IR) have been studied for many years, generally
showing the dependence of these responses on the quality of radiation, ie, the radiation …
showing the dependence of these responses on the quality of radiation, ie, the radiation …
Off-target analysis in gene editing and applications for clinical translation of CRISPR/Cas9 in HIV-1 therapy
As genome-editing nucleases move toward broader clinical applications, the need to define
the limits of their specificity and efficiency increases. A variety of approaches for nuclease …
the limits of their specificity and efficiency increases. A variety of approaches for nuclease …
Non-canonical DNA/RNA structures during transcription-coupled double-strand break repair: roadblocks or bona fide repair intermediates?
Although long overlooked, it is now well understood that DNA does not systematically
assemble into a canonical double helix, known as B-DNA, throughout the entire genome but …
assemble into a canonical double helix, known as B-DNA, throughout the entire genome but …
In vivo dynamics and regulation of DNA G-quadruplex structures in mammals
Abstract G-quadruplex (G4) is a four-stranded helical DNA secondary structure formed by
guanine-rich sequence folding, and G4 has been computationally predicted to exist in a …
guanine-rich sequence folding, and G4 has been computationally predicted to exist in a …
Endogenous DNA double-strand breaks during DNA transactions: emerging insights and methods for genome-wide profiling
BAM Bouwman, N Crosetto - Genes, 2018 - mdpi.com
DNA double-strand breaks (DSBs) jeopardize genome integrity and can—when repaired
unfaithfully—give rise to structural rearrangements associated with cancer. Exogenous …
unfaithfully—give rise to structural rearrangements associated with cancer. Exogenous …