Re-thinking the environment in landscape genomics

B Dauphin, C Rellstab, RO Wüest, DN Karger… - Trends in Ecology & …, 2023 - cell.com
Detecting the extrinsic selective pressures sha** genomic variation is critical for a better
understanding of adaptation and for forecasting evolutionary responses of natural …

Epigenetic alterations of maternal tobacco smoking during pregnancy: a narrative review

A Nakamura, O François, J Lepeule - International Journal of …, 2021 - mdpi.com
In utero exposure to maternal tobacco smoking is the leading cause of birth complications in
addition to being associated with later impairment in child's development. Epigenetic …

A beginner's guide to low‐coverage whole genome sequencing for population genomics

RN Lou, A Jacobs, AP Wilder… - Molecular …, 2021 - Wiley Online Library
Low‐coverage whole genome sequencing (lcWGS) has emerged as a powerful and cost‐
effective approach for population genomic studies in both model and nonmodel species …

LEA: An R package for landscape and ecological association studies

E Frichot, O François - Methods in Ecology and Evolution, 2015 - Wiley Online Library
Based on population genomic and environmental data, genomewide ecological association
studies aim at detecting allele frequencies that exhibit significant statistical association with …

The enormous repetitive Antarctic krill genome reveals environmental adaptations and population insights

C Shao, S Sun, K Liu, J Wang, S Li, Q Liu, BE Deagle… - Cell, 2023 - cell.com
Antarctic krill (Euphausia superba) is Earth's most abundant wild animal, and its enormous
biomass is vital to the Southern Ocean ecosystem. Here, we report a 48.01-Gb chromosome …

The paradox of adaptive trait clines with nonclinal patterns in the underlying genes

KE Lotterhos - Proceedings of the National Academy of …, 2023 - National Acad Sciences
Multivariate climate change presents an urgent need to understand how species adapt to
complex environments. Population genetic theory predicts that loci under selection will form …

Pearl millet genomic vulnerability to climate change in West Africa highlights the need for regional collaboration

B Rhoné, D Defrance, C Berthouly-Salazar… - Nature …, 2020 - nature.com
Climate change is already affecting agro-ecosystems and threatening food security by
reducing crop productivity and increasing harvest uncertainty. Mobilizing crop diversity could …

OSCA: a tool for omic-data-based complex trait analysis

F Zhang, W Chen, Z Zhu, Q Zhang, MF Nabais, T Qi… - Genome biology, 2019 - Springer
The rapid increase of omic data has greatly facilitated the investigation of associations
between omic profiles such as DNA methylation (DNAm) and complex traits in large cohorts …

Genomic vulnerability to rapid climate warming in a tree species with a long generation time

B Dauphin, C Rellstab, M Schmid, S Zoller… - Global Change …, 2021 - Wiley Online Library
The ongoing increase in global temperature affects biodiversity, especially in mountain
regions where climate change is exacerbated. As sessile, long‐lived organisms, trees are …

Copy number variants outperform SNPs to reveal genotype–temperature association in a marine species

Y Dorant, H Cayuela, K Wellband, M Laporte… - Molecular …, 2020 - Wiley Online Library
Copy number variants (CNVs) are a major component of genotypic and phenotypic variation
in genomes. To date, our knowledge of genotypic variation and evolution has largely been …