Phage diversity, genomics and phylogeny
Recent advances in viral metagenomics have enabled the rapid discovery of an
unprecedented catalogue of phages in numerous environments, from the human gut to the …
unprecedented catalogue of phages in numerous environments, from the human gut to the …
Horizontal gene transfer of antibiotic resistance genes in biofilms
C Michaelis, E Grohmann - Antibiotics, 2023 - mdpi.com
Most bacteria attach to biotic or abiotic surfaces and are embedded in a complex matrix
which is known as biofilm. Biofilm formation is especially worrisome in clinical settings as it …
which is known as biofilm. Biofilm formation is especially worrisome in clinical settings as it …
Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks
Microbiomes from every environment contain a myriad of uncultivated archaeal and
bacterial viruses, but studying these viruses is hampered by the lack of a universal, scalable …
bacterial viruses, but studying these viruses is hampered by the lack of a universal, scalable …
Marine DNA viral macro-and microdiversity from pole to pole
Microbes drive most ecosystems and are modulated by viruses that impact their lifespan,
gene flow, and metabolic outputs. However, ecosystem-level impacts of viral community …
gene flow, and metabolic outputs. However, ecosystem-level impacts of viral community …
[HTML][HTML] Expansion of the global RNA virome reveals diverse clades of bacteriophages
High-throughput RNA sequencing offers broad opportunities to explore the Earth RNA
virome. Mining 5,150 diverse metatranscriptomes uncovered> 2.5 million RNA virus contigs …
virome. Mining 5,150 diverse metatranscriptomes uncovered> 2.5 million RNA virus contigs …
Bacteriophages of the human gut: the “known unknown” of the microbiome
The human gut microbiome is a dense and taxonomically diverse consortium of
microorganisms. While the bacterial components of the microbiome have received …
microorganisms. While the bacterial components of the microbiome have received …
Minimum information about an uncultivated virus genome (MIUViG)
We present an extension of the Minimum Information about any (x) Sequence (MIxS)
standard for reporting sequences of uncultivated virus genomes. Minimum Information about …
standard for reporting sequences of uncultivated virus genomes. Minimum Information about …
Phage puppet masters of the marine microbial realm
Viruses numerically dominate our oceans; however, we have only just begun to document
the diversity, host range and infection dynamics of marine viruses, as well as the subsequent …
the diversity, host range and infection dynamics of marine viruses, as well as the subsequent …
Tara Oceans: towards global ocean ecosystems biology
A planetary-scale understanding of the ocean ecosystem, particularly in light of climate
change, is crucial. Here, we review the work of Tara Oceans, an international …
change, is crucial. Here, we review the work of Tara Oceans, an international …
Metagenomic tools in microbial ecology research
Ability to directly sequence DNA from the environment permanently changed microbial
ecology. Here, we review the new insights to microbial life gleaned from the applications of …
ecology. Here, we review the new insights to microbial life gleaned from the applications of …