Post-translational modifications of histones that influence nucleosome dynamics

GD Bowman, MG Poirier - Chemical reviews, 2014 - ACS Publications
Nucleosomes are efficient DNA-packaging units. The fundamental protein unit of the
nucleosome is the histone dimer, a simple α-helical domain possessing a highly basic …

Dynamic regulation of transcriptional states by chromatin and transcription factors

TC Voss, GL Hager - Nature Reviews Genetics, 2014 - nature.com
The interaction of regulatory proteins with the complex nucleoprotein structures that are
found in mammalian cells involves chromatin reorganization at multiple levels. Mechanisms …

Steroid receptors reprogram FoxA1 occupancy through dynamic chromatin transitions

EE Swinstead, TB Miranda, V Paakinaho, S Baek… - Cell, 2016 - cell.com
The estrogen receptor (ER), glucocorticoid receptor (GR), and forkhead box protein 1
(FoxA1) are significant factors in breast cancer progression. FoxA1 has been implicated in …

Histones: at the crossroads of peptide and protein chemistry

MM Müller, TW Muir - Chemical reviews, 2015 - ACS Publications
1. INTRODUCTION In eukaryotic cells, inheritable information is stored in a nucleoprotein
complex referred to as chromatin. 1 This genome architecture serves two key purposes. On …

DNase footprint signatures are dictated by factor dynamics and DNA sequence

MH Sung, MJ Guertin, S Baek, GL Hager - Molecular cell, 2014 - cell.com
Genomic footprinting has emerged as an unbiased discovery method for transcription factor
(TF) occupancy at cognate DNA in vivo. A basic premise of footprinting is that sequence …

Regulating the chromatin landscape: structural and mechanistic perspectives

B Bartholomew - Annual review of biochemistry, 2014 - annualreviews.org
A large family of chromatin remodelers that noncovalently modify chromatin is crucial in cell
development and differentiation. They are often the targets of cancer, neurological disorders …

Chromatin remodeling by ATP‐dependent molecular machines

A Lusser, JT Kadonaga - Bioessays, 2003 - Wiley Online Library
The eukaryotic genome is packaged into a periodic nucleoprotein structure termed
chromatin. The repeating unit of chromatin, the nucleosome, consists of DNA that is wound …

Chromatin remodeling by ISW2 and SWI/SNF requires DNA translocation inside the nucleosome

M Zofall, J Persinger, SR Kassabov… - Nature structural & …, 2006 - nature.com
Chromatin-remodeling complexes regulate access to nucleosomal DNA by mobilizing
nucleosomes in an ATP-dependent manner. In this study, we find that chromatin remodeling …

[HTML][HTML] ISWI remodelers slide nucleosomes with coordinated multi-base-pair entry steps and single-base-pair exit steps

S Deindl, WL Hwang, SK Hota, TR Blosser, P Prasad… - Cell, 2013 - cell.com
ISWI-family enzymes remodel chromatin by sliding nucleosomes along DNA, but the
nucleosome translocation mechanism remains unclear. Here we use single-molecule FRET …

SWI/SNF unwraps, slides, and rewraps the nucleosome

SR Kassabov, B Zhang, J Persinger, B Bartholomew - Molecular cell, 2003 - cell.com
The structure of the SWI/SNF-remodeled nucleosome was characterized with single base-
pair resolution by map** the contacts of specific histone fold residues with nucleosomal …