Harnessing genomics to fast-track genetic improvement in aquaculture
Aquaculture is the fastest-growing farmed food sector and will soon become the primary
source of fish and shellfish for human diets. In contrast to crop and livestock production …
source of fish and shellfish for human diets. In contrast to crop and livestock production …
Whole-genome regression and prediction methods applied to plant and animal breeding
G de Los Campos, JM Hickey, R Pong-Wong… - Genetics, 2013 - academic.oup.com
Genomic-enabled prediction is becoming increasingly important in animal and plant
breeding and is also receiving attention in human genetics. Deriving accurate predictions of …
breeding and is also receiving attention in human genetics. Deriving accurate predictions of …
Pitfalls of predicting complex traits from SNPs
The success of genome-wide association studies (GWASs) has led to increasing interest in
making predictions of complex trait phenotypes, including disease, from genotype data …
making predictions of complex trait phenotypes, including disease, from genotype data …
Genomic selection: genome-wide prediction in plant improvement
Association analysis is used to measure relations between markers and quantitative trait loci
(QTL). Their estimation ignores genes with small effects that trigger underpinning …
(QTL). Their estimation ignores genes with small effects that trigger underpinning …
Overfitting, model tuning, and evaluation of prediction performance
OA Montesinos López, A Montesinos López… - … learning methods for …, 2022 - Springer
The overfitting phenomenon happens when a statistical machine learning model learns very
well about the noise as well as the signal that is present in the training data. On the other …
well about the noise as well as the signal that is present in the training data. On the other …
[HTML][HTML] Physiological breeding
M Reynolds, P Langridge - Current opinion in plant biology, 2016 - Elsevier
Highlights•New crop designs capitalize on over half a century of physiological
research.•Remote sensing permits evaluation of genetic resources for complex trait …
research.•Remote sensing permits evaluation of genetic resources for complex trait …
Genome-wide prediction models that incorporate de novo GWAS are a powerful new tool for tropical rice improvement
To address the multiple challenges to food security posed by global climate change,
population growth and rising incomes, plant breeders are develo** new crop varieties that …
population growth and rising incomes, plant breeders are develo** new crop varieties that …
Enhancing genetic gain through genomic selection: from livestock to plants
Although long-term genetic gain has been achieved through increasing use of modern
breeding methods and technologies, the rate of genetic gain needs to be accelerated to …
breeding methods and technologies, the rate of genetic gain needs to be accelerated to …
[HTML][HTML] Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding
Hybrid potato breeding will transform the crop from a clonally propagated tetraploid to a
seed-reproducing diploid. Historical accumulation of deleterious mutations in potato …
seed-reproducing diploid. Historical accumulation of deleterious mutations in potato …
Breeding beyond monoculture: Putting the “intercrop” into crops
Intercrop** is both a well-established and yet novel agricultural practice, depending on
one's perspective. Such perspectives are principally governed by geographic location and …
one's perspective. Such perspectives are principally governed by geographic location and …