Living systematic reviews: an emerging opportunity to narrow the evidence-practice gap

JH Elliott, T Turner, O Clavisi, J Thomas… - PLoS …, 2014 - journals.plos.org
Julian Elliott and colleagues discuss how the current inability to keep systematic reviews up-
to-date hampers the translation of knowledge into action. They propose living systematic …

Information retrieval and text mining technologies for chemistry

M Krallinger, O Rabal, A Lourenco, J Oyarzabal… - Chemical …, 2017 - ACS Publications
Efficient access to chemical information contained in scientific literature, patents, technical
reports, or the web is a pressing need shared by researchers and patent attorneys from …

WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research

DN Slenter, M Kutmon, K Hanspers… - Nucleic acids …, 2018 - academic.oup.com
WikiPathways (wikipathways. org) captures the collective knowledge represented in
biological pathways. By providing a database in a curated, machine readable way, omics …

Defining the disease liability of variants in the cystic fibrosis transmembrane conductance regulator gene

PR Sosnay, KR Siklosi, F Van Goor, K Kaniecki, H Yu… - Nature …, 2013 - nature.com
Allelic heterogeneity in disease-causing genes presents a substantial challenge to the
translation of genomic variation into clinical practice. Few of the almost 2,000 variants in the …

Gateways to the FANTOM5 promoter level mammalian expression atlas

M Lizio, J Harshbarger, H Shimoji, J Severin… - Genome biology, 2015 - Springer
The FANTOM5 project investigates transcription initiation activities in more than 1,000
human and mouse primary cells, cell lines and tissues using CAGE. Based on manual …

Ocean FAIR data services

T Tanhua, S Pouliquen, J Hausman… - Frontiers in Marine …, 2019 - frontiersin.org
Well-founded data management systems are of vital importance for ocean observing
systems as they ensure that essential data are not only collected but also retained and made …

Content‐based citation analysis: The next generation of citation analysis

Y Ding, G Zhang, T Chambers, M Song… - Journal of the …, 2014 - Wiley Online Library
Traditional citation analysis has been widely applied to detect patterns of scientific
collaboration, map the landscapes of scholarly disciplines, assess the impact of research …

Extraction of relations between genes and diseases from text and large-scale data analysis: implications for translational research

À Bravo, J Piñero, N Queralt-Rosinach, M Rautschka… - BMC …, 2015 - Springer
Background Current biomedical research needs to leverage and exploit the large amount of
information reported in scientific publications. Automated text mining approaches, in …

[HTML][HTML] Open PHACTS: semantic interoperability for drug discovery

AJ Williams, L Harland, P Groth, S Pettifer… - Drug discovery today, 2012 - Elsevier
Open PHACTS is a public–private partnership between academia, publishers, small and
medium sized enterprises and pharmaceutical companies. The goal of the project is to …

The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery

M Dumontier, CJO Baker, J Baran, A Callahan… - Journal of biomedical …, 2014 - Springer
Abstract The Semanticscience Integrated Ontology (SIO) is an ontology to facilitate
biomedical knowledge discovery. SIO features a simple upper level comprised of essential …