Enhancer hijacking activates GFI1 family oncogenes in medulloblastoma
Medulloblastoma is a highly malignant paediatric brain tumour currently treated with a
combination of surgery, radiation and chemotherapy, posing a considerable burden of …
combination of surgery, radiation and chemotherapy, posing a considerable burden of …
Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1
JA Law, J Du, CJ Hale, S Feng, K Krajewski… - Nature, 2013 - nature.com
DNA methylation is an epigenetic modification that has critical roles in gene silencing,
development and genome integrity. In Arabidopsis, DNA methylation is established by …
development and genome integrity. In Arabidopsis, DNA methylation is established by …
A survey of motif finding Web tools for detecting binding site motifs in ChIP-Seq data
NTL Tran, CH Huang - Biology direct, 2014 - Springer
ChIP-Seq (chromatin immunoprecipitation sequencing) has provided the advantage for
finding motifs as ChIP-Seq experiments narrow down the motif finding to binding site …
finding motifs as ChIP-Seq experiments narrow down the motif finding to binding site …
Direct roles of SPEECHLESS in the specification of stomatal self-renewing cells
Lineage-specific stem cells are critical for the production and maintenance of specific cell
types and tissues in multicellular organisms. In Arabidopsis, the initiation and proliferation of …
types and tissues in multicellular organisms. In Arabidopsis, the initiation and proliferation of …
DDR complex facilitates global association of RNA polymerase V to promoters and evolutionarily young transposons
X Zhong, CJ Hale, JA Law, LM Johnson… - Nature structural & …, 2012 - nature.com
The plant-specific DNA-dependent RNA polymerase V (Pol V) evolved from Pol II to function
in an RNA-directed DNA methylation pathway. Here, we have identified targets of Pol V in …
in an RNA-directed DNA methylation pathway. Here, we have identified targets of Pol V in …
Genomic analysis of DNA binding and gene regulation by homologous nucleoid-associated proteins IHF and HU in Escherichia coli K12
AI Prieto, C Kahramanoglou, RM Ali… - Nucleic acids …, 2012 - academic.oup.com
IHF and HU are two heterodimeric nucleoid-associated proteins (NAP) that belong to the
same protein family but interact differently with the DNA. IHF is a sequence-specific DNA …
same protein family but interact differently with the DNA. IHF is a sequence-specific DNA …
Evaluating tools for transcription factor binding site prediction
N Jayaram, D Usvyat, AC R. Martin - BMC bioinformatics, 2016 - Springer
Background Binding of transcription factors to transcription factor binding sites (TFBSs) is
key to the mediation of transcriptional regulation. Information on experimentally validated …
key to the mediation of transcriptional regulation. Information on experimentally validated …
Response Regulator Heterodimer Formation Controls a Key Stage in Streptomyces Development
The orphan, atypical response regulators BldM and WhiI each play critical roles in
Streptomyces differentiation. BldM is required for the formation of aerial hyphae, and WhiI is …
Streptomyces differentiation. BldM is required for the formation of aerial hyphae, and WhiI is …
Nuclear actin is required for transcription during Drosophila oogenesis
M Sokolova, HM Moore, B Prajapati, J Dopie… - Iscience, 2018 - cell.com
Actin has been linked to processes spanning the whole gene expression cascade, from
regulating specific transcription factors, such as myocardin-related transcription factor, to …
regulating specific transcription factors, such as myocardin-related transcription factor, to …
Global analysis of the regulon of the transcriptional repressor LexA, a key component of SOS response in Mycobacterium tuberculosis
KL Smollett, KM Smith, C Kahramanoglou… - Journal of Biological …, 2012 - ASBMB
The DNA damage response is crucial for bacterial survival. The transcriptional repressor
LexA is a key component of the SOS response, the main mechanism for the regulation of …
LexA is a key component of the SOS response, the main mechanism for the regulation of …