Enhancer hijacking activates GFI1 family oncogenes in medulloblastoma

PA Northcott, C Lee, T Zichner, AM Stütz, S Erkek… - Nature, 2014 - nature.com
Medulloblastoma is a highly malignant paediatric brain tumour currently treated with a
combination of surgery, radiation and chemotherapy, posing a considerable burden of …

Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1

JA Law, J Du, CJ Hale, S Feng, K Krajewski… - Nature, 2013 - nature.com
DNA methylation is an epigenetic modification that has critical roles in gene silencing,
development and genome integrity. In Arabidopsis, DNA methylation is established by …

A survey of motif finding Web tools for detecting binding site motifs in ChIP-Seq data

NTL Tran, CH Huang - Biology direct, 2014 - Springer
ChIP-Seq (chromatin immunoprecipitation sequencing) has provided the advantage for
finding motifs as ChIP-Seq experiments narrow down the motif finding to binding site …

Direct roles of SPEECHLESS in the specification of stomatal self-renewing cells

OS Lau, KA Davies, J Chang, J Adrian, MH Rowe… - Science, 2014 - science.org
Lineage-specific stem cells are critical for the production and maintenance of specific cell
types and tissues in multicellular organisms. In Arabidopsis, the initiation and proliferation of …

DDR complex facilitates global association of RNA polymerase V to promoters and evolutionarily young transposons

X Zhong, CJ Hale, JA Law, LM Johnson… - Nature structural & …, 2012 - nature.com
The plant-specific DNA-dependent RNA polymerase V (Pol V) evolved from Pol II to function
in an RNA-directed DNA methylation pathway. Here, we have identified targets of Pol V in …

Genomic analysis of DNA binding and gene regulation by homologous nucleoid-associated proteins IHF and HU in Escherichia coli K12

AI Prieto, C Kahramanoglou, RM Ali… - Nucleic acids …, 2012 - academic.oup.com
IHF and HU are two heterodimeric nucleoid-associated proteins (NAP) that belong to the
same protein family but interact differently with the DNA. IHF is a sequence-specific DNA …

Evaluating tools for transcription factor binding site prediction

N Jayaram, D Usvyat, AC R. Martin - BMC bioinformatics, 2016 - Springer
Background Binding of transcription factors to transcription factor binding sites (TFBSs) is
key to the mediation of transcriptional regulation. Information on experimentally validated …

Response Regulator Heterodimer Formation Controls a Key Stage in Streptomyces Development

MM Al-Bassam, MJ Bibb, MJ Bush, G Chandra… - PLoS …, 2014 - journals.plos.org
The orphan, atypical response regulators BldM and WhiI each play critical roles in
Streptomyces differentiation. BldM is required for the formation of aerial hyphae, and WhiI is …

Nuclear actin is required for transcription during Drosophila oogenesis

M Sokolova, HM Moore, B Prajapati, J Dopie… - Iscience, 2018 - cell.com
Actin has been linked to processes spanning the whole gene expression cascade, from
regulating specific transcription factors, such as myocardin-related transcription factor, to …

Global analysis of the regulon of the transcriptional repressor LexA, a key component of SOS response in Mycobacterium tuberculosis

KL Smollett, KM Smith, C Kahramanoglou… - Journal of Biological …, 2012 - ASBMB
The DNA damage response is crucial for bacterial survival. The transcriptional repressor
LexA is a key component of the SOS response, the main mechanism for the regulation of …