Engineering whole-cell microbial biosensors: Design principles and applications in monitoring and treatment of heavy metals and organic pollutants

C Liu, H Yu, B Zhang, S Liu, C Liu, F Li, H Song - Biotechnology Advances, 2022 - Elsevier
Biosensors have been widely used as cost-effective, rapid, in situ, and real-time analytical
tools for monitoring environments. The development of synthetic biology has enabled …

Local and global regulation of transcription initiation in bacteria

DF Browning, SJW Busby - Nature Reviews Microbiology, 2016 - nature.com
Gene expression in bacteria relies on promoter recognition by the DNA-dependent RNA
polymerase and subsequent transcription initiation. Bacterial cells are able to tune their …

The AAA+ superfamily: a review of the structural and mechanistic principles of these molecular machines

YA Khan, KI White, AT Brunger - Critical reviews in biochemistry …, 2022 - Taylor & Francis
ATPases associated with diverse cellular activities (AAA+ proteins) are a superfamily of
proteins found throughout all domains of life. The hallmark of this family is a conserved …

Treponema pallidum, the syphilis spirochete: making a living as a stealth pathogen

JD Radolf, RK Deka, A Anand, D Šmajs… - Nature Reviews …, 2016 - nature.com
The past two decades have seen a worldwide resurgence in infections caused by
Treponema pallidum subsp. pallidum, the syphilis spirochete. The well-recognized capacity …

Diversity, versatility and complexity of bacterial gene regulation mechanisms: opportunities and drawbacks for applications in synthetic biology

I Bervoets, D Charlier - FEMS microbiology reviews, 2019 - academic.oup.com
Gene expression occurs in two essential steps: transcription and translation. In bacteria, the
two processes are tightly coupled in time and space, and highly regulated. Tight regulation …

Gene sets and mechanisms of sulfate-reducing bacteria biofilm formation and quorum sensing with impact on corrosion

AK Tripathi, P Thakur, P Saxena, S Rauniyar… - Frontiers in …, 2021 - frontiersin.org
Sulfate-reducing bacteria (SRB) have a unique ability to respire under anaerobic conditions
using sulfate as a terminal electron acceptor, reducing it to hydrogen sulfide. SRB thrives in …

Mechanistic insights into c-di-GMP–dependent control of the biofilm regulator FleQ from Pseudomonas aeruginosa

BY Matsuyama, PV Krasteva… - Proceedings of the …, 2016 - National Acad Sciences
Bacterial biofilm formation during chronic infections confers increased fitness, antibiotic
tolerance, and cytotoxicity. In many pathogens, the transition from a planktonic lifestyle to …

The plant RWP-RK transcription factors: key regulators of nitrogen responses and of gametophyte development

C Chardin, T Girin, F Roudier, C Meyer… - … of experimental botany, 2014 - academic.oup.com
The plant specific RWP-RK family of transcription factors, initially identified in legumes and
Chlamydomonas, are found in all vascular plants, green algae, and slime molds. These …

Cyclic diguanosine monophosphate represses bacterial flagella synthesis by interacting with the Walker A motif of the enhancer-binding protein FleQ

C Baraquet, CS Harwood - Proceedings of the National …, 2013 - National Acad Sciences
The transcription factor FleQ is a bacterial AAA+ ATPase enhancer-binding protein that is
the master activator of flagella gene expression in the opportunistic bacterial pathogen …

Nitrogen stress response and stringent response are coupled in Escherichia coli

DR Brown, G Barton, Z Pan, M Buck… - Nature …, 2014 - nature.com
Assimilation of nitrogen is an essential process in bacteria. The nitrogen regulation stress
response is an adaptive mechanism used by nitrogen-starved Escherichia coli to scavenge …