Mass spectrometry-based detection and assignment of protein posttranslational modifications

S Doll, AL Burlingame - ACS chemical biology, 2015‏ - ACS Publications
Recent advances in mass spectrometry (MS)-based proteomics allow the identification and
quantitation of thousands of posttranslational modification (PTM) sites in a single …

The role of electron transfer dissociation in modern proteomics

NM Riley, JJ Coon - Analytical Chemistry, 2018‏ - ACS Publications
(MS) and MS-driven proteomics have continued to develop as the premier tools for
characterizing proteome composition, structure, and function. 2 The new era of proteomics …

Protein methylation in mitochondria

JM Małecki, E Davydova, PØ Falnes - Journal of Biological Chemistry, 2022‏ - jbc.org
Many proteins are modified by posttranslational methylation, introduced by a number of
methyltransferases (MTases). Protein methylation plays important roles in modulating …

Protein arginine methylation: a prominent modification and its demethylation

J Wesche, S Kühn, BM Kessler, M Salton… - Cellular and Molecular …, 2017‏ - Springer
Arginine methylation of histones is one mechanism of epigenetic regulation in eukaryotic
cells. Methylarginines can also be found in non-histone proteins involved in various different …

NDUFAF7 methylates arginine 85 in the NDUFS2 subunit of human complex I

VF Rhein, J Carroll, S Ding, IM Fearnley… - Journal of Biological …, 2013‏ - jbc.org
Complex I (NADH ubiquinone oxidoreductase) in mammalian mitochondria is an L-shaped
assembly of 44 subunits. One arm is embedded in the inner membrane with the other …

An IonStar experimental strategy for MS1 ion current-based quantification using ultrahigh-field orbitrap: reproducible, in-depth, and accurate protein measurement in …

X Shen, S Shen, J Li, Q Hu, L Nie, C Tu… - Journal of proteome …, 2017‏ - ACS Publications
In-depth and reproducible protein measurement in many biological samples is often critical
for pharmaceutical/biomedical proteomics but remains challenging. MS1-based …

The story of protein arginine methylation: characterization, regulation, and function

C Peng, CCL Wong - Expert Review of Proteomics, 2017‏ - Taylor & Francis
Introduction: Arginine methylation is an important post-translational modification (PTM) in
cells, which is catalyzed by a group of protein arginine methyltransferases (PRMTs). It plays …

[HTML][HTML] Large scale mass spectrometry-based identifications of enzyme-mediated protein methylation are subject to high false discovery rates

G Hart-Smith, D Yagoub, AP Tay, R Pickford… - Molecular & Cellular …, 2016‏ - Elsevier
All large scale LC-MS/MS post-translational methylation site discovery experiments require
methylpeptide spectrum matches (methyl-PSMs) to be identified at acceptably low false …

The Alba protein family: Structure and function

M Goyal, C Banerjee, S Nag… - Biochimica et Biophysica …, 2016‏ - Elsevier
Alba family proteins are small, basic, dimeric nucleic acid-binding proteins, which are widely
distributed in archaea and a number of eukaryotes. This family of proteins bears the distinct …

Emerging technologies to map the protein methylome

SM Carlson, O Gozani - Journal of molecular biology, 2014‏ - Elsevier
Protein methylation plays an integral role in cellular signaling, most notably by modulating
proteins bound at chromatin and increasingly through regulation of non-histone proteins …