[BOOK][B] Computational topology for data analysis

TK Dey, Y Wang - 2022 - books.google.com
" In this chapter, we introduce some of the very basics that are used throughout the book.
First, we give the definition of a topological space and related notions of open and closed …

Topology-preserving deep image segmentation

X Hu, F Li, D Samaras, C Chen - Advances in neural …, 2019 - proceedings.neurips.cc
Segmentation algorithms are prone to make topological errors on fine-scale struc-tures, eg,
broken connections. We propose a novel method that learns to segment with correct …

Localization in the crowd with topological constraints

S Abousamra, M Hoai, D Samaras… - Proceedings of the AAAI …, 2021 - ojs.aaai.org
We address the problem of crowd localization, ie, the prediction of dots corresponding to
people in a crowded scene. Due to various challenges, a localization method is prone to …

[PDF][PDF] Ripser. py: A lean persistent homology library for python

C Tralie, N Saul, R Bar-On - Journal of Open Source Software, 2018 - joss.theoj.org
Topological data analysis (TDA)(Edelsbrunner & Harer, 2010),(Carlsson, 2009) is a field
focused on understanding the shape and structure of data by computing topological …

[HTML][HTML] Advancing precision medicine: algebraic topology and differential geometry in radiology and computational pathology

RM Levenson, Y Singh, B Rieck, QA Hathaway… - Laboratory …, 2024 - Elsevier
Precision medicine aims to provide personalized care based on individual patient
characteristics, rather than guideline-directed therapies for groups of diseases or patient …

Topology-aware segmentation using discrete morse theory

X Hu, Y Wang, L Fuxin, D Samaras, C Chen - arxiv preprint arxiv …, 2021 - arxiv.org
In the segmentation of fine-scale structures from natural and biomedical images, per-pixel
accuracy is not the only metric of concern. Topological correctness, such as vessel …

Persistence enhanced graph neural network

Q Zhao, Z Ye, C Chen, Y Wang - … Conference on Artificial …, 2020 - proceedings.mlr.press
Local structural information can increase the adaptability of graph convolutional networks to
large graphs with heterogeneous topology. Existing methods only use relatively simplistic …

Topological detection of trojaned neural networks

S Zheng, Y Zhang, H Wagner… - Advances in Neural …, 2021 - proceedings.neurips.cc
Deep neural networks are known to have security issues. One particular threat is the Trojan
attack. It occurs when the attackers stealthily manipulate the model's behavior through …

Topogan: A topology-aware generative adversarial network

F Wang, H Liu, D Samaras, C Chen - … , Glasgow, UK, August 23–28, 2020 …, 2020 - Springer
Existing generative adversarial networks (GANs) focus on generating realistic images based
on CNN-derived image features, but fail to preserve the structural properties of real images …

Cycle representation learning for inductive relation prediction

Z Yan, T Ma, L Gao, Z Tang… - … Conference on Machine …, 2022 - proceedings.mlr.press
In recent years, algebraic topology and its modern development, the theory of persistent
homology, has shown great potential in graph representation learning. In this paper, based …