[HTML][HTML] How genomics can help biodiversity conservation

K Theissinger, C Fernandes, G Formenti, I Bista… - Trends in genetics, 2023 - cell.com
The availability of public genomic resources can greatly assist biodiversity assessment,
conservation, and restoration efforts by providing evidence for scientifically informed …

The evolutionary significance of polyploidy

Y Van de Peer, E Mizrachi, K Marchal - Nature Reviews Genetics, 2017 - nature.com
Polyploidy, or the duplication of entire genomes, has been observed in prokaryotic and
eukaryotic organisms, and in somatic and germ cells. The consequences of polyploidization …

[HTML][HTML] What are the 100 most cited fungal genera?

CS Bhunjun, YJ Chen, C Phukhamsakda… - Studies in …, 2024 - ingentaconnect.com
The global diversity of fungi has been estimated between 2 to 11 million species, of which
only about 155 000 have been named. Most fungi are invisible to the unaided eye, but they …

Complex scaffold remodeling in plant triterpene biosynthesis

R De La Peña, H Hodgson, JCT Liu, MJ Stephenson… - Science, 2023 - science.org
Triterpenes with complex scaffold modifications are widespread in the plant kingdom.
Limonoids are an exemplary family that are responsible for the bitter taste in citrus (eg …

Evolution of coastal forests based on a full set of mangrove genomes

Z He, X Feng, Q Chen, L Li, S Li, K Han, Z Guo… - Nature ecology & …, 2022 - nature.com
Genomic studies are now poised to explore whole communities of species. The~ 70 species
of woody plants that anchor the coastal ecosystems of the tropics, collectively referred to as …

Emerald ash borer management and research: decades of damage and still expanding

J Sun, TM Koski, JD Wickham… - Annual Review of …, 2024 - annualreviews.org
Since the discovery of the ash tree (Fraxinus spp.) killer emerald ash borer (EAB; Agrilus
planipennis) in the United States in 2002 and Moscow, Russia in 2003, substantial detection …

Genome of wild olive and the evolution of oil biosynthesis

T Unver, Z Wu, L Sterck, M Turktas, R Lohaus… - Proceedings of the …, 2017 - pnas.org
Here we present the genome sequence and annotation of the wild olive tree (Olea europaea
var. sylvestris), called oleaster, which is considered an ancestor of cultivated olive trees …

Many, but not all, lineage-specific genes can be explained by homology detection failure

CM Weisman, AW Murray, SR Eddy - PLoS biology, 2020 - journals.plos.org
Genes for which homologs can be detected only in a limited group of evolutionarily related
species, called “lineage-specific genes,” are pervasive: Essentially every lineage has them …

[PDF][PDF] Asterid phylogenomics/phylotranscriptomics uncover morphological evolutionary histories and support phylogenetic placement for numerous whole-genome …

C Zhang, T Zhang, F Luebert, Y **ang… - Molecular biology …, 2020 - academic.oup.com
Asterids are one of the most successful angiosperm lineages, exhibiting extensive
morphological diversity and including a number of important crops. Despite their biological …

[PDF][PDF] Leveraging multiple transcriptome assembly methods for improved gene structure annotation

L Venturini, S Caim, GG Kaithakottil, DL Mapleson… - …, 2018 - academic.oup.com
Background The performance of RNA sequencing (RNA-seq) aligners and assemblers
varies greatly across different organisms and experiments, and often the optimal approach is …