NICEpath: Finding metabolic pathways in large networks through atom-conserving substrate–product pairs
J Hafner, V Hatzimanikatis - Bioinformatics, 2021 - academic.oup.com
Motivation Finding biosynthetic pathways is essential for metabolic engineering of
organisms to produce chemicals, biodegradation prediction of pollutants and drugs, and for …
organisms to produce chemicals, biodegradation prediction of pollutants and drugs, and for …
Metabolic engineering of Escherichia coli for quinolinic acid production by assembling L-aspartate oxidase and quinolinate synthase as an enzyme complex
Quinolinic acid (QA) is a key intermediate of nicotinic acid (Niacin) which is an essential
human nutrient and widely used in food and pharmaceutical industries. In this study, a …
human nutrient and widely used in food and pharmaceutical industries. In this study, a …
Finding branched pathways in metabolic network via atom group tracking
Y Huang, Y **e, C Zhong, F Zhou - PLOS Computational Biology, 2021 - journals.plos.org
Finding non-standard or new metabolic pathways has important applications in metabolic
engineering, synthetic biology and the analysis and reconstruction of metabolic networks …
engineering, synthetic biology and the analysis and reconstruction of metabolic networks …
Uncovering in vivo biochemical patterns from time-series metabolic dynamics
System biology relies on holistic biomolecule measurements, and untangling biochemical
networks requires time-series metabolomics profiling. With current metabolomic …
networks requires time-series metabolomics profiling. With current metabolomic …
AFP: Finding pathways accounting for stoichiometry along with atom group tracking in metabolic network
Y Huang, T Ma, Z Wan, C Zhong, J Wang - Journal of Biotechnology, 2024 - Elsevier
Automatically finding novel pathways plays an important role in the initial designs of
metabolic pathways in synthetic biology and metabolic engineering. Although path-finding …
metabolic pathways in synthetic biology and metabolic engineering. Although path-finding …
NetFlow: A tool for isolating carbon flows in genome-scale metabolic networks
Genome-scale stoichiometric models (GSMs) have been widely utilized to predict and
understand cellular metabolism. GSMs and the flux predictions resulting from them have …
understand cellular metabolism. GSMs and the flux predictions resulting from them have …
PATHFINDING VISUALIZER.
A Maurya, A Yadav, A Baiswar - Journal on Software …, 2022 - search.ebscohost.com
Visualizations of algorithms contribute to improving computer science education. The
process of teaching and learning of algorithms is sometimes, complex and hard to …
process of teaching and learning of algorithms is sometimes, complex and hard to …