Metabolite–enzyme coevolution: from single enzymes to metabolic pathways and networks

L Noda-Garcia, W Liebermeister… - Annual Review of …, 2018 - annualreviews.org
How individual enzymes evolved is relatively well understood. However, individual enzymes
rarely confer a physiological advantage on their own. Judging by its current state, the …

The limits of enzyme specificity and the evolution of metabolism

A Peracchi - Trends in biochemical sciences, 2018 - cell.com
The substrate specificity of enzymes is bound to be imperfect, because of unavoidable
physicochemical limits. In extant metabolic enzymes, furthermore, such limits are seldom …

How enzyme promiscuity and horizontal gene transfer contribute to metabolic innovation

ME Glasner, DP Truong, BC Morse - The FEBS journal, 2020 - Wiley Online Library
Promiscuity is the coincidental ability of an enzyme to catalyze its native reaction and
additional reactions that are not biological functions in the same active site. Promiscuity …

Biochemical and structural elucidation of the L-carnitine degradation pathway of the human pathogen Acinetobacter baumannii

F Piskol, P Lukat, L Kaufhold, A Heger… - Frontiers in …, 2024 - frontiersin.org
Acinetobacter baumannii is an opportunistic human pathogen which can use host-derived L-
carnitine as sole carbon and energy source. Recently, an L-carnitine transporter (Aci1347) …

Bi-allelic CLPB mutations cause cataract, renal cysts, nephrocalcinosis and 3-methylglutaconic aciduria, a novel disorder of mitochondrial protein disaggregation

M Kanabus, R Shahni, JW Saldanha, E Murphy… - Journal of inherited …, 2015 - Springer
Whole exome sequencing was used to investigate the genetic cause of mitochondrial
disease in two siblings with a syndrome of congenital lamellar cataracts associated with …

Uncovering a superfamily of nickel-dependent hydroxyacid racemases and epimerases

B Desguin, J Urdiain-Arraiza, M Da Costa, M Fellner… - Scientific reports, 2020 - nature.com
Isomerization reactions are fundamental in biology. Lactate racemase, which isomerizes L-
and D-lactate, is composed of the LarA protein and a nickel-containing cofactor, the nickel …

Harnessing underground metabolism for pathway development

J Rosenberg, FM Commichau - Trends in biotechnology, 2019 - cell.com
Fermentative production of valuable substances is an economically competitive and
ecologically sustainable alternative to chemical synthesis, but it is often hampered by …

Exploiting enzyme promiscuity to shape plant specialized metabolism

W Kreis, J Munkert - Journal of experimental botany, 2019 - academic.oup.com
The amazing variability of plant metabolism and its rapid divergence during evolution pose
fundamental questions as to the driving forces, mechanisms, and players in metabolic …

The carnitine degradation pathway of Acinetobacter baumannii and its role in virulence

J Breisch, C Schumm, A Poehlein… - Environmental …, 2022 - Wiley Online Library
The opportunistic human pathogen Acinetobacter baumannii can grow with carnitine but its
metabolism, regulation and role in virulence remained elusive. Recently, we identified a …

Evolutionary repurposing of a sulfatase: A new Michaelis complex leads to efficient transition state charge offset

CM Miton, S Jonas, G Fischer… - Proceedings of the …, 2018 - National Acad Sciences
The recruitment and evolutionary optimization of promiscuous enzymes is key to the rapid
adaptation of organisms to changing environments. Our understanding of the precise …