Function of alternative splicing

O Kelemen, P Convertini, Z Zhang, Y Wen, M Shen… - Gene, 2013 - Elsevier
Almost all polymerase II transcripts undergo alternative pre-mRNA splicing. Here, we review
the functions of alternative splicing events that have been experimentally determined. The …

Origin and evolution of spliceosomal introns

IB Rogozin, L Carmel, M Csuros, EV Koonin - Biology direct, 2012 - Springer
Evolution of exon-intron structure of eukaryotic genes has been a matter of long-standing,
intensive debate. The introns-early concept, later rebranded 'introns first'held that protein …

The Rice Resistance Protein Pair RGA4/RGA5 Recognizes the Magnaporthe oryzae Effectors AVR-Pia and AVR1-CO39 by Direct Binding

S Cesari, G Thilliez, C Ribot, V Chalvon, C Michel… - The Plant …, 2013 - academic.oup.com
Resistance (R) proteins recognize pathogen avirulence (Avr) proteins by direct or indirect
binding and are multidomain proteins generally carrying a nucleotide binding (NB) and a …

APPRIS: annotation of principal and alternative splice isoforms

JM Rodriguez, P Maietta, I Ezkurdia… - Nucleic acids …, 2013 - academic.oup.com
Here, we present APPRIS (http://appris. bioinfo. cnio. es), a database that houses
annotations of human splice isoforms. APPRIS has been designed to provide value to …

Do not panic: An intron-centric guide to alternative splicing

E Petrillo - The Plant Cell, 2023 - academic.oup.com
This review is an attempt to establish concepts of splicing and alternative splicing giving
proper relevance to introns, the key actors in this mechanism. It might also work as a guide …

Transfer and functional consequences of dietary microRNAs in vertebrates: concepts in search of corroboration: negative results challenge the hypothesis that dietary …

KW Witwer, KD Hirschi - Bioessays, 2014 - Wiley Online Library
If validated, diet‐derived foreign microRNA absorption and function in consuming
vertebrates would drastically alter our understanding of nutrition and ecology. RNA …

Discovery and mass spectrometric analysis of novel splice-junction peptides using RNA-Seq

GM Sheynkman, MR Shortreed, BL Frey… - Molecular & Cellular …, 2013 - ASBMB
Human proteomic databases required for MS peptide identification are frequently updated
and carefully curated, yet are still incomplete because it has been challenging to acquire …

Principles and correction of 5'-splice site selection

F Malard, CD Mackereth, S Campagne - RNA biology, 2022 - Taylor & Francis
In Eukarya, immature mRNA transcripts (pre-mRNA) often contain coding sequences, or
exons, interleaved by non-coding sequences, or introns. Introns are removed upon splicing …

Glycosylphosphatidylinositol-Anchored Proteins in Arabidopsis and One of Their Common Roles in Signaling Transduction

K Zhou - Frontiers in Plant Science, 2019 - frontiersin.org
Diverse proteins are found modified with glycosylphosphatidylinositol (GPI) at their carboxyl
terminus in eukaryotes, which allows them to associate with membrane lipid bilayers and …

Systematically differentiating functions for alternatively spliced isoforms through integrating RNA-seq data

R Eksi, HD Li, R Menon, Y Wen… - PLoS computational …, 2013 - journals.plos.org
Integrating large-scale functional genomic data has significantly accelerated our
understanding of gene functions. However, no algorithm has been developed to differentiate …