[HTML][HTML] Kinetic models in industrial biotechnology–improving cell factory performance

J Almquist, M Cvijovic, V Hatzimanikatis, J Nielsen… - Metabolic …, 2014 - Elsevier
An increasing number of industrial bioprocesses capitalize on living cells by using them as
cell factories that convert sugars into chemicals. These processes range from the production …

Constructing kinetic models of metabolism at genome‐scales: a review

S Srinivasan, WR Cluett, R Mahadevan - Biotechnology journal, 2015 - Wiley Online Library
Constraint‐based modeling of biological networks (metabolism, transcription and signal
transduction), although used successfully in many applications, suffer from specific …

Assessment of prediction uncertainty quantification methods in systems biology

AF Villaverde, E Raimúndez… - … ACM transactions on …, 2022 - ieeexplore.ieee.org
Biological processes are often modelled using ordinary differential equations. The unknown
parameters of these models are estimated by optimizing the fit of model simulation and …

Designing biological systems: systems engineering meets synthetic biology

S Rollié, M Mangold, K Sundmacher - Chemical Engineering Science, 2012 - Elsevier
Synthetic Biology offers qualitatively new perspectives on the benefits of industrially
harnessed biological processes. The ability to modify and reprogramme natural biology …

Parameter estimation in large-scale systems biology models: a parallel and self-adaptive cooperative strategy

DR Penas, P González, JA Egea, R Doallo… - BMC …, 2017 - Springer
Background The development of large-scale kinetic models is one of the current key issues
in computational systems biology and bioinformatics. Here we consider the problem of …