Protein lipidation: occurrence, mechanisms, biological functions, and enabling technologies

H Jiang, X Zhang, X Chen, P Aramsangtienchai… - Chemical …, 2018 - ACS Publications
Protein lipidation, including cysteine prenylation, N-terminal glycine myristoylation, cysteine
palmitoylation, and serine and lysine fatty acylation, occurs in many proteins in eukaryotic …

Protein palmitoylation in neuronal development and synaptic plasticity

Y Fukata, M Fukata - Nature Reviews Neuroscience, 2010 - nature.com
Protein palmitoylation, a classical and common lipid modification, regulates diverse aspects
of neuronal protein trafficking and function. The reversible nature of palmitoylation provides …

[HTML][HTML] Protein post-translational modifications: In silico prediction tools and molecular modeling

M Audagnotto, M Dal Peraro - Computational and structural biotechnology …, 2017 - Elsevier
Post-translational modifications (PTMs) occur in almost all proteins and play an important
role in numerous biological processes by significantly affecting proteins' structure and …

GPS-Palm: a deep learning-based graphic presentation system for the prediction of S-palmitoylation sites in proteins

W Ning, P Jiang, Y Guo, C Wang, X Tan… - Briefings in …, 2021 - academic.oup.com
As an important reversible lipid modification, S-palmitoylation mainly occurs at specific
cysteine residues in proteins, participates in regulating various biological processes and is …

GPS-Lipid: a robust tool for the prediction of multiple lipid modification sites

Y **e, Y Zheng, H Li, X Luo, Z He, S Cao, Y Shi… - Scientific reports, 2016 - nature.com
As one of the most common post-translational modifications in eukaryotic cells, lipid
modification is an important mechanism for the regulation of variety aspects of protein …

Prediction of Ubiquitination Sites by Using the Composition of k-Spaced Amino Acid Pairs

Z Chen, YZ Chen, XF Wang, C Wang, RX Yan… - PloS one, 2011 - journals.plos.org
As one of the most important reversible protein post-translation modifications, ubiquitination
has been reported to be involved in lots of biological processes and closely implicated with …

SPalmitoylC-PseAAC: A sequence-based model developed via Chou's 5-steps rule and general PseAAC for identifying S-palmitoylation sites in proteins

W Hussain, YD Khan, N Rasool, SA Khan… - Analytical biochemistry, 2019 - Elsevier
S-Palmitoylation is a uniquely reversible and biologically important post-translational
modification as it plays an essential role in a variety of cellular processes including signal …

[HTML][HTML] Prediction of lysine formylation sites using the composition of k-spaced amino acid pairs via Chou's 5-steps rule and general pseudo components

Z Ju, SY Wang - Genomics, 2020 - Elsevier
Lysine formylation is a newly discovered post-translational modification in histones, which
plays a crucial role in epigenetics of chromatin function and DNA binding. In this study, a …

Prediction of citrullination sites by incorporating k-spaced amino acid pairs into Chou's general pseudo amino acid composition

Z Ju, SY Wang - Gene, 2018 - Elsevier
As one of the most important and common protein post-translational modifications,
citrullination plays a key role in regulating various biological processes and is associated …

NPalmitoylDeep-PseAAC: A predictor of N-palmitoylation sites in proteins using deep representations of proteins and PseAAC via modified 5-steps rule

S Naseer, W Hussain, YD Khan… - Current …, 2021 - benthamdirect.com
Background: Among all the major Post-translational modification, lipid modifications possess
special significance due to their widespread functional importance in eukaryotic cells. There …