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Harnessing the power of RADseq for ecological and evolutionary genomics
High-throughput techniques based on restriction site-associated DNA sequencing (RADseq)
are enabling the low-cost discovery and genoty** of thousands of genetic markers for any …
are enabling the low-cost discovery and genoty** of thousands of genetic markers for any …
A practical guide to environmental association analysis in landscape genomics
Landscape genomics is an emerging research field that aims to identify the environmental
factors that shape adaptive genetic variation and the gene variants that drive local …
factors that shape adaptive genetic variation and the gene variants that drive local …
Lost in parameter space: a road map for stacks
Restriction site‐Associated DNA sequencing (RAD‐seq) has become a widely adopted
method for genoty** populations of model and non‐model organisms. Generating a …
method for genoty** populations of model and non‐model organisms. Generating a …
Stacks: an analysis tool set for population genomics
Massively parallel short‐read sequencing technologies, coupled with powerful software
platforms, are enabling investigators to analyse tens of thousands of genetic markers. This …
platforms, are enabling investigators to analyse tens of thousands of genetic markers. This …
Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genoty** in Model and Non-Model Species
The ability to efficiently and accurately determine genotypes is a keystone technology in
modern genetics, crucial to studies ranging from clinical diagnostics, to genotype-phenotype …
modern genetics, crucial to studies ranging from clinical diagnostics, to genotype-phenotype …
Stacks: Building and Genoty** Loci De Novo From Short-Read Sequences
Advances in sequencing technology provide special opportunities for genoty** individuals
with speed and thrift, but the lack of software to automate the calling of tens of thousands of …
with speed and thrift, but the lack of software to automate the calling of tens of thousands of …
Genome-wide genetic marker discovery and genoty** using next-generation sequencing
The advent of next-generation sequencing (NGS) has revolutionized genomic and
transcriptomic approaches to biology. These new sequencing tools are also valuable for the …
transcriptomic approaches to biology. These new sequencing tools are also valuable for the …
2b-RAD: a simple and flexible method for genome-wide genoty**
We describe 2b-RAD, a streamlined restriction site–associated DNA (RAD) genoty**
method based on sequencing the uniform fragments produced by type IIB restriction …
method based on sequencing the uniform fragments produced by type IIB restriction …
Switchgrass genomic diversity, ploidy, and evolution: novel insights from a network-based SNP discovery protocol
Switchgrass (Panicum virgatum L.) is a perennial grass that has been designated as an
herbaceous model biofuel crop for the United States of America. To facilitate accelerated …
herbaceous model biofuel crop for the United States of America. To facilitate accelerated …
Short tree, long tree, right tree, wrong tree: new acquisition bias corrections for inferring SNP phylogenies
Single nucleotide polymorphisms (SNPs) are useful markers for phylogenetic studies owing
in part to their ubiquity throughout the genome and ease of collection. Restriction site …
in part to their ubiquity throughout the genome and ease of collection. Restriction site …