Principles of seed banks and the emergence of complexity from dormancy

JT Lennon, F den Hollander… - Nature …, 2021 - nature.com
Across the tree of life, populations have evolved the capacity to contend with suboptimal
conditions by engaging in dormancy, whereby individuals enter a reversible state of reduced …

Evolution with a seed bank: The population genetic consequences of microbial dormancy

WR Shoemaker, JT Lennon - Evolutionary applications, 2018 - Wiley Online Library
Dormancy is a bet‐hedging strategy that allows organisms to persist through conditions that
are suboptimal for growth and reproduction by entering a reversible state of reduced …

Microbial population dynamics and evolutionary outcomes under extreme energy limitation

WR Shoemaker, SE Jones, ME Muscarella… - Proceedings of the …, 2021 - pnas.org
Microorganisms commonly inhabit energy-limited ecosystems where cellular maintenance
and reproduction is highly constrained. To gain insight into how individuals persist under …

Incorporating ecology into gene drive modelling

J Kim, KD Harris, IK Kim, S Shemesh… - Ecology …, 2023 - Wiley Online Library
Gene drive technology, in which fast‐spreading engineered drive alleles are introduced into
wild populations, represents a promising new tool in the fight against vector‐borne diseases …

Variability of Bacterial Essential Genes Among Closely Related Bacteria: The Case of Escherichia coli

E Martínez-Carranza, H Barajas, LD Alcaraz… - Frontiers in …, 2018 - frontiersin.org
The definition of bacterial essential genes has been widely pursued using different
approaches. Their study has impacted several fields of research such as synthetic biology …

A branching process model for dormancy and seed banks in randomly fluctuating environments

J Blath, F Hermann, M Slowik - Journal of Mathematical Biology, 2021 - Springer
The goal of this article is to contribute towards the conceptual and quantitative
understanding of the evolutionary benefits for (microbial) populations to maintain a seed …

The transcriptional regulators of the CRP family regulate different essential bacterial functions and can be inherited vertically and horizontally

G Soberón-Chávez, LD Alcaraz, E Morales… - Frontiers in …, 2017 - frontiersin.org
One of the best-studied transcriptional regulatory proteins in bacteria is the Escherichia coli
catabolite repressor protein (CRP) that when complexed with 3′-5′-cyclic AMP (cAMP) …

Fisher–Wright model with deterministic seed bank and selection

B Koopmann, J Müller, A Tellier, D Živković - Theoretical Population …, 2017 - Elsevier
Seed banks are common characteristics to many plant species, which allow storage of
genetic diversity in the soil as dormant seeds for various periods of time. We investigate an …

The seed bank coalescent with simultaneous switching

J Blath, A González Casanova, N Kurt… - 2020 - projecteuclid.org
We introduce a new Wright-Fisher type model for seed banks incorporating “simultaneous
switching”, which is motivated by recent work on microbial dormancy ([21],[28]). We show …

A stochastic adaptive dynamics model for bacterial populations with mutation, dormancy and transfer

J Blath, T Paul, A Tóbiás - arxiv preprint arxiv:2105.09228, 2021 - arxiv.org
This paper introduces a stochastic adaptive dynamics model for the interplay of several
crucial traits and mechanisms in bacterial evolution, namely dormancy, horizontal gene …