Nonspecific binding—fundamental concepts and consequences for biosensing applications

A Frutiger, A Tanno, S Hwu, RF Tiefenauer… - Chemical …, 2021 - ACS Publications
Nature achieves differentiation of specific and nonspecific binding in molecular interactions
through precise control of biomolecules in space and time. Artificial systems such as …

Electrostatic interactions in protein structure, folding, binding, and condensation

HX Zhou, X Pang - Chemical reviews, 2018 - ACS Publications
Charged and polar groups, through forming ion pairs, hydrogen bonds, and other less
specific electrostatic interactions, impart important properties to proteins. Modulation of the …

Effects of common mutations in the SARS-CoV-2 Spike RBD and its ligand, the human ACE2 receptor on binding affinity and kinetics

MI Barton, SA MacGowan, MA Kutuzov, O Dushek… - Elife, 2021 - elifesciences.org
The interaction between the SARS-CoV-2 virus Spike protein receptor binding domain
(RBD) and the ACE2 cell surface protein is required for viral infection of cells. Mutations in …

Complete protein–protein association kinetics in atomic detail revealed by molecular dynamics simulations and Markov modelling

N Plattner, S Doerr, G De Fabritiis, F Noé - Nature chemistry, 2017 - nature.com
Protein–protein association is fundamental to many life processes. However, a microscopic
model describing the structures and kinetics during association and dissociation is lacking …

Intrinsically disordered protein

AK Dunker, JD Lawson, CJ Brown, RM Williams… - Journal of molecular …, 2001 - Elsevier
Proteins can exist in a trinity of structures: the ordered state, the molten globule, and the
random coil. The five following examples suggest that native protein structure can …

[HTML][HTML] Protein immobilization techniques for microfluidic assays

D Kim, AE Herr - Biomicrofluidics, 2013 - pubs.aip.org
Microfluidic systems have shown unequivocal performance improvements over conventional
bench-top assays across a range of performance metrics. For example, specific advances …

Principles of docking: An overview of search algorithms and a guide to scoring functions

I Halperin, B Ma, H Wolfson… - … : Structure, Function, and …, 2002 - Wiley Online Library
The docking field has come of age. The time is ripe to present the principles of docking,
reviewing the current state of the field. Two reasons are largely responsible for the maturity …

Flow-induced elongation of von Willebrand factor precedes tension-dependent activation

H Fu, Y Jiang, D Yang, F Scheiflinger, WP Wong… - Nature …, 2017 - nature.com
Von Willebrand factor, an ultralarge concatemeric blood protein, must bind to platelet GPIbα
during bleeding to mediate hemostasis, but not in the normal circulation to avoid thrombosis …

Advances in antibody design

KE Tiller, PM Tessier - Annual review of biomedical engineering, 2015 - annualreviews.org
The use of monoclonal antibodies as therapeutics requires optimizing several of their key
attributes. These include binding affinity and specificity, folding stability, solubility …

Theory, practice, and applications of paramagnetic relaxation enhancement for the characterization of transient low-population states of biological macromolecules …

GM Clore, J Iwahara - Chemical reviews, 2009 - ACS Publications
Understanding the function of biological macromolecules and their complexes at the
physicochemical level requires knowledge of both their structure and dynamics …