Novel sex‐determining genes in fish and sex chromosome evolution

K Kikuchi, S Hamaguchi - Developmental Dynamics, 2013 - Wiley Online Library
Although the molecular mechanisms underlying many developmental events are conserved
across vertebrate taxa, the lability at the top of the sex‐determining (SD) cascade has been …

Stacks: an analysis tool set for population genomics

J Catchen, PA Hohenlohe, S Bassham… - Molecular …, 2013 - Wiley Online Library
Massively parallel short‐read sequencing technologies, coupled with powerful software
platforms, are enabling investigators to analyse tens of thousands of genetic markers. This …

Annotated genes and nonannotated genomes: cross‐species use of Gene Ontology in ecology and evolution research

CR Primmer, S Papakostas, EH Leder… - Molecular …, 2013 - Wiley Online Library
Recent advances in molecular technologies have opened up unprecedented opportunities
for molecular ecologists to better understand the molecular basis of traits of ecological and …

Comparing RADseq and microsatellites for estimating genetic diversity and relatedness—Implications for brown trout conservation

A Lemopoulos, JM Prokkola… - Ecology and …, 2019 - Wiley Online Library
The conservation and management of endangered species requires information on their
genetic diversity, relatedness and population structure. The main genetic markers applied …

Target capture and massively parallel sequencing of ultraconserved elements for comparative studies at shallow evolutionary time scales

BT Smith, MG Harvey, BC Faircloth, TC Glenn… - Systematic …, 2014 - academic.oup.com
Comparative genetic studies of non-model organisms are transforming rapidly due to major
advances in sequencing technology. A limiting factor in these studies has been the …

A framework phylogeny of the American oak clade based on sequenced RAD data

AL Hipp, DAR Eaton, J Cavender-Bares, E Fitzek… - PloS one, 2014 - journals.plos.org
Previous phylogenetic studies in oaks (Quercus, Fagaceae) have failed to resolve the
backbone topology of the genus with strong support. Here, we utilize next-generation …

Estimation of population allele frequencies from next‐generation sequencing data: pool‐versus individual‐based genoty**

M Gautier, J Foucaud, K Gharbi, T Cézard… - Molecular …, 2013 - Wiley Online Library
Molecular markers produced by next‐generation sequencing (NGS) technologies are
revolutionizing genetic research. However, the costs of analysing large numbers of …

Identification of sex‐specific molecular markers using restriction site‐associated DNA sequencing

T Gamble, D Zarkower - Molecular Ecology Resources, 2014 - Wiley Online Library
A major barrier to evolutionary studies of sex determination and sex chromosomes has been
a lack of information on the types of sex‐determining mechanisms that occur among different …

A High-Quality Assembly of the Nine-Spined Stickleback (Pungitius pungitius) Genome

S Varadharajan, P Rastas, A Löytynoja… - Genome Biology and …, 2019 - academic.oup.com
The Gasterosteidae fish family hosts several species that are important models for eco-
evolutionary, genetic, and genomic research. In particular, a wealth of genetic and genomic …

Population genomic evidence for adaptive differentiation in the Baltic Sea herring

B Guo, Z Li, J Merilä - Molecular ecology, 2016 - Wiley Online Library
Detecting and estimating the degree of genetic differentiation among populations of highly
mobile marine fish having pelagic larval stages is challenging because their effective …