Topologically associating domains and regulatory landscapes in development, evolution and disease

JJ Tena, JM Santos-Pereira - Frontiers in cell and developmental …, 2021 - frontiersin.org
Animal genomes are folded in topologically associating domains (TADs) that have been
linked to the regulation of the genes they contain by constraining regulatory interactions …

Evolutionary crossroads in developmental biology: amphioxus

S Bertrand, H Escriva - Development, 2011 - journals.biologists.com
The phylogenetic position of amphioxus, together with its relatively simple and evolutionarily
conserved morphology and genome structure, has led to its use as a model for studies of …

Amphioxus functional genomics and the origins of vertebrate gene regulation

F Marlétaz, PN Firbas, I Maeso, JJ Tena, O Bogdanovic… - Nature, 2018 - nature.com
Vertebrates have greatly elaborated the basic chordate body plan and evolved highly
distinctive genomes that have been sculpted by two whole-genome duplications. Here we …

Genomic analysis of the immune gene repertoire of amphioxus reveals extraordinary innate complexity and diversity

S Huang, S Yuan, L Guo, Y Yu, J Li, T Wu, T Liu… - Genome …, 2008 - genome.cshlp.org
It has been speculated that before vertebrates evolved somatic diversity-based adaptive
immunity, the germline-encoded diversity of innate immunity may have been more …

Molecular regionalization of the develo** amphioxus neural tube challenges major partitions of the vertebrate brain

B Albuixech-Crespo, L López-Blanch, D Burguera… - PLoS …, 2017 - journals.plos.org
All vertebrate brains develop following a common Bauplan defined by anteroposterior (AP)
and dorsoventral (DV) subdivisions, characterized by largely conserved differential …

A single three-dimensional chromatin compartment in amphioxus indicates a stepwise evolution of vertebrate Hox bimodal regulation

RD Acemel, JJ Tena, I Irastorza-Azcarate, F Marlétaz… - Nature …, 2016 - nature.com
Abstract The HoxA and HoxD gene clusters of jawed vertebrates are organized into bipartite
three-dimensional chromatin structures that separate long-range regulatory inputs coming …

Amphioxus FGF signaling predicts the acquisition of vertebrate morphological traits

S Bertrand, A Camasses, I Somorjai… - Proceedings of the …, 2011 - pnas.org
FGF signaling is one of the few cell–cell signaling pathways conserved among all
metazoans. The diversity of FGF gene content among different phyla suggests that evolution …

An updated staging system for cephalochordate development: one table suits them all

JE Carvalho, F Lahaye, LW Yong, JC Croce… - Frontiers in Cell and …, 2021 - frontiersin.org
Chordates are divided into three subphyla: Vertebrata, Tunicata, and Cephalochordata.
Phylogenetically, the Cephalochordata, more commonly known as lancelets or amphioxus …

Amphioxus as a model to study the evolution of development in chordates

S d'Aniello, S Bertrand, H Escriva - Elife, 2023 - elifesciences.org
Cephalochordates and tunicates represent the only two groups of invertebrate chordates,
and extant cephalochordates–commonly known as amphioxus or lancelets–are considered …

Embryo bioassays with aquatic animals for toxicity testing and hazard assessment of emerging pollutants: A review

R Capela, J Garric, LFC Castro, MM Santos - Science of the Total …, 2020 - Elsevier
This review article gathers the available information on the use of embryo-tests as high-
throughput tools for toxicity screening, hazard assessment and prioritization of new and …