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Topologically associating domains and regulatory landscapes in development, evolution and disease
JJ Tena, JM Santos-Pereira - Frontiers in cell and developmental …, 2021 - frontiersin.org
Animal genomes are folded in topologically associating domains (TADs) that have been
linked to the regulation of the genes they contain by constraining regulatory interactions …
linked to the regulation of the genes they contain by constraining regulatory interactions …
Evolutionary crossroads in developmental biology: amphioxus
S Bertrand, H Escriva - Development, 2011 - journals.biologists.com
The phylogenetic position of amphioxus, together with its relatively simple and evolutionarily
conserved morphology and genome structure, has led to its use as a model for studies of …
conserved morphology and genome structure, has led to its use as a model for studies of …
Amphioxus functional genomics and the origins of vertebrate gene regulation
Vertebrates have greatly elaborated the basic chordate body plan and evolved highly
distinctive genomes that have been sculpted by two whole-genome duplications. Here we …
distinctive genomes that have been sculpted by two whole-genome duplications. Here we …
Genomic analysis of the immune gene repertoire of amphioxus reveals extraordinary innate complexity and diversity
S Huang, S Yuan, L Guo, Y Yu, J Li, T Wu, T Liu… - Genome …, 2008 - genome.cshlp.org
It has been speculated that before vertebrates evolved somatic diversity-based adaptive
immunity, the germline-encoded diversity of innate immunity may have been more …
immunity, the germline-encoded diversity of innate immunity may have been more …
Molecular regionalization of the develo** amphioxus neural tube challenges major partitions of the vertebrate brain
B Albuixech-Crespo, L López-Blanch, D Burguera… - PLoS …, 2017 - journals.plos.org
All vertebrate brains develop following a common Bauplan defined by anteroposterior (AP)
and dorsoventral (DV) subdivisions, characterized by largely conserved differential …
and dorsoventral (DV) subdivisions, characterized by largely conserved differential …
A single three-dimensional chromatin compartment in amphioxus indicates a stepwise evolution of vertebrate Hox bimodal regulation
Abstract The HoxA and HoxD gene clusters of jawed vertebrates are organized into bipartite
three-dimensional chromatin structures that separate long-range regulatory inputs coming …
three-dimensional chromatin structures that separate long-range regulatory inputs coming …
Amphioxus FGF signaling predicts the acquisition of vertebrate morphological traits
S Bertrand, A Camasses, I Somorjai… - Proceedings of the …, 2011 - pnas.org
FGF signaling is one of the few cell–cell signaling pathways conserved among all
metazoans. The diversity of FGF gene content among different phyla suggests that evolution …
metazoans. The diversity of FGF gene content among different phyla suggests that evolution …
An updated staging system for cephalochordate development: one table suits them all
Chordates are divided into three subphyla: Vertebrata, Tunicata, and Cephalochordata.
Phylogenetically, the Cephalochordata, more commonly known as lancelets or amphioxus …
Phylogenetically, the Cephalochordata, more commonly known as lancelets or amphioxus …
Amphioxus as a model to study the evolution of development in chordates
Cephalochordates and tunicates represent the only two groups of invertebrate chordates,
and extant cephalochordates–commonly known as amphioxus or lancelets–are considered …
and extant cephalochordates–commonly known as amphioxus or lancelets–are considered …
Embryo bioassays with aquatic animals for toxicity testing and hazard assessment of emerging pollutants: A review
This review article gathers the available information on the use of embryo-tests as high-
throughput tools for toxicity screening, hazard assessment and prioritization of new and …
throughput tools for toxicity screening, hazard assessment and prioritization of new and …