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[HTML][HTML] Analysis and interpretation of the impact of missense variants in cancer
Large scale genome sequencing allowed the identification of a massive number of genetic
variations, whose impact on human health is still unknown. In this review we analyze, by an …
variations, whose impact on human health is still unknown. In this review we analyze, by an …
Loss-of-function, gain-of-function and dominant-negative mutations have profoundly different effects on protein structure
Most known pathogenic mutations occur in protein-coding regions of DNA and change the
way proteins are made. Taking protein structure into account has therefore provided great …
way proteins are made. Taking protein structure into account has therefore provided great …
An AAV capsid reprogrammed to bind human transferrin receptor mediates brain-wide gene delivery
Q Huang, KY Chan, J Wu, NR Botticello-Romero… - Science, 2024 - science.org
Develo** vehicles that efficiently deliver genes throughout the human central nervous
system (CNS) will broaden the range of treatable genetic diseases. We engineered an …
system (CNS) will broaden the range of treatable genetic diseases. We engineered an …
Molecular and cellular evolution of the primate dorsolateral prefrontal cortex
The granular dorsolateral prefrontal cortex (dlPFC) is an evolutionary specialization of
primates that is centrally involved in cognition. We assessed more than 600,000 single …
primates that is centrally involved in cognition. We assessed more than 600,000 single …
Mutation informatics: SARS-CoV-2 receptor-binding domain of the spike protein
S Verma, VM Patil, MK Gupta - Drug Discovery Today, 2022 - Elsevier
Highlights•Mutation informatics study on RBD of SARS-CoV-2 variants.•Discussion of small
molecules targeting the RBD/ACE2 interface.•Ideation to design novel inhibitors against wild …
molecules targeting the RBD/ACE2 interface.•Ideation to design novel inhibitors against wild …
Activating Point Mutations in the MET Kinase Domain Represent a Unique Molecular Subset of Lung Cancer and Other Malignancies Targetable with MET Inhibitors
Activating point mutations in the MET tyrosine kinase domain (TKD) are oncogenic in a
subset of papillary renal cell carcinomas. Here, using comprehensive genomic profiling …
subset of papillary renal cell carcinomas. Here, using comprehensive genomic profiling …
[HTML][HTML] Analysis of missense variants in the human genome reveals widespread gene-specific clustering and improves prediction of pathogenicity
We used a machine learning approach to analyze the within-gene distribution of missense
variants observed in hereditary conditions and cancer. When applied to 840 genes from the …
variants observed in hereditary conditions and cancer. When applied to 840 genes from the …
Predicting functional effect of missense variants using graph attention neural networks
Accurate prediction of damaging missense variants is critically important for interpreting a
genome sequence. Although many methods have been developed, their performance has …
genome sequence. Although many methods have been developed, their performance has …
SLC6A1 variant pathogenicity, molecular function and phenotype: a genetic and clinical analysis
A Stefanski, E Pérez-Palma, T Brünger, L Montanucci… - Brain, 2023 - academic.oup.com
Genetic variants in the SLC6A1 gene can cause a broad phenotypic disease spectrum by
altering the protein function. Thus, systematically curated clinically relevant genotype …
altering the protein function. Thus, systematically curated clinically relevant genotype …
Genomics 2 Proteins portal: a resource and discovery tool for linking genetic screening outputs to protein sequences and structures
Recent advances in AI-based methods have revolutionized the field of structural biology.
Concomitantly, high-throughput sequencing and functional genomics have generated …
Concomitantly, high-throughput sequencing and functional genomics have generated …