Genome-wide genetic marker discovery and genoty** using next-generation sequencing

JW Davey, PA Hohenlohe, PD Etter, JQ Boone… - Nature Reviews …, 2011 - nature.com
The advent of next-generation sequencing (NGS) has revolutionized genomic and
transcriptomic approaches to biology. These new sequencing tools are also valuable for the …

Next-generation phenoty**: requirements and strategies for enhancing our understanding of genotype–phenotype relationships and its relevance to crop …

JN Cobb, G DeClerck, A Greenberg, R Clark… - Theoretical and Applied …, 2013 - Springer
More accurate and precise phenoty** strategies are necessary to empower high-
resolution linkage map** and genome-wide association studies and for training genomic …

A reference genome for common bean and genome-wide analysis of dual domestications

J Schmutz, PE McClean, S Mamidi, GA Wu… - Nature …, 2014 - nature.com
Common bean (Phaseolus vulgaris L.) is the most important grain legume for human
consumption and has a role in sustainable agriculture owing to its ability to fix atmospheric …

Development of high-density genetic maps for barley and wheat using a novel two-enzyme genoty**-by-sequencing approach

JA Poland, PJ Brown, ME Sorrells, JL Jannink - PloS one, 2012 - journals.plos.org
Advancements in next-generation sequencing technology have enabled whole genome re-
sequencing in many species providing unprecedented discovery and characterization of …

Genoty**‐by‐sequencing for plant breeding and genetics

JA Poland, TW Rife - The plant genome, 2012 - Wiley Online Library
Rapid advances in “next‐generation” DNA sequencing technology have brought the US
$1000 human (Homo sapiens) genome within reach while providing the raw sequencing …

Switchgrass genomic diversity, ploidy, and evolution: novel insights from a network-based SNP discovery protocol

F Lu, AE Lipka, J Glaubitz, R Elshire, JH Cherney… - PLoS …, 2013 - journals.plos.org
Switchgrass (Panicum virgatum L.) is a perennial grass that has been designated as an
herbaceous model biofuel crop for the United States of America. To facilitate accelerated …

Development and evaluation of SoySNP50K, a high-density genoty** array for soybean

Q Song, DL Hyten, G Jia, CV Quigley, EW Fickus… - PloS one, 2013 - journals.plos.org
The objective of this research was to identify single nucleotide polymorphisms (SNPs) and to
develop an Illumina Infinium BeadChip that contained over 50,000 SNPs from soybean …

Applications of next-generation sequencing to phylogeography and phylogenetics

JE McCormack, SM Hird, AJ Zellmer… - Molecular phylogenetics …, 2013 - Elsevier
This is a time of unprecedented transition in DNA sequencing technologies. Next-generation
sequencing (NGS) clearly holds promise for fast and cost-effective generation of multilocus …

A review of breeding objectives, genomic resources, and marker-assisted methods in common bean (Phaseolus vulgaris L.)

T Assefa, A Assibi Mahama, AV Brown, EKS Cannon… - Molecular …, 2019 - Springer
Common bean (Phaseolus vulgaris L.), one of the most important grain legume crops for
direct human consumption, faces many challenges as a crop. Domesticated from wild …

A high‐density, SNP‐based consensus map of tetraploid wheat as a bridge to integrate durum and bread wheat genomics and breeding

M Maccaferri, A Ricci, S Salvi, SG Milner… - Plant biotechnology …, 2015 - Wiley Online Library
Consensus linkage maps are important tools in crop genomics. We have assembled a high‐
density tetraploid wheat consensus map by integrating 13 data sets from independent …