The future is now: Amplicon sequencing and sequence capture usher in the conservation genomics era
The genomics revolution has initiated a new era of population genetics where genome‐wide
data are frequently used to understand complex patterns of population structure and …
data are frequently used to understand complex patterns of population structure and …
Big data in conservation genomics: Boosting skills, hedging bets, and staying current in the field
A current challenge in the fields of evolutionary, ecological, and conservation genomics is
balancing production of large-scale datasets with additional training often required to handle …
balancing production of large-scale datasets with additional training often required to handle …
Identifying and conserving sympatric diversity in trout of the genus Salmo, with particular reference to Lough Melvin, Ireland
A Ferguson, PA Prodöhl - Ecology of Freshwater Fish, 2022 - Wiley Online Library
Salmonid (Salmonidae) sympatric diversity is the co‐occurrence, in a lake or river, of two or
more reproductively isolated populations/subpopulations, or phenotypes resulting from …
more reproductively isolated populations/subpopulations, or phenotypes resulting from …
Retention of a chromosomal inversion from an anadromous ancestor provides the genetic basis for alternative freshwater ecotypes in rainbow trout
Migratory behaviour patterns in animals are controlled by a complex genetic architecture.
Rainbow trout (Oncorhynchus mykiss) is a salmonid fish that spawns in streams but exhibits …
Rainbow trout (Oncorhynchus mykiss) is a salmonid fish that spawns in streams but exhibits …
A GT‐seq panel for walleye (Sander vitreus) provides important insights for efficient development and implementation of amplicon panels in non‐model organisms
ML Bootsma, KM Gruenthal… - Molecular Ecology …, 2020 - Wiley Online Library
Targeted amplicon sequencing methods, such as genoty**‐in‐thousands by sequencing
(GT‐seq), facilitate rapid, accurate, and cost‐effective analysis of hundreds of genetic loci in …
(GT‐seq), facilitate rapid, accurate, and cost‐effective analysis of hundreds of genetic loci in …
Dense SNP panels resolve closely related Chinook salmon populations
Chinook salmon (Oncorhynchus tshawytscha) are migratory fish that are highly valued for
subsistence, sport, and commercial fisheries throughout their native range. Populations of …
subsistence, sport, and commercial fisheries throughout their native range. Populations of …
Attack of the PCR clones: Rates of clonality have little effect on RAD‐seq genotype calls
Abstract Interpretation of high‐throughput sequence data requires an understanding of how
decisions made during bioinformatic data processing can influence results. One source of …
decisions made during bioinformatic data processing can influence results. One source of …
Network analysis of linkage disequilibrium reveals genome architecture in chum salmon
G McKinney, MV McPhee, C Pascal… - G3: Genes …, 2020 - academic.oup.com
Many studies exclude loci that exhibit linkage disequilibrium (LD); however, high LD can
signal reduced recombination around genomic features such as chromosome inversions or …
signal reduced recombination around genomic features such as chromosome inversions or …
Using fish hard‐part microchemistry and genetics to quantify population impacts of low‐use lock‐and‐dam structures on the Alabama River
Objective We used two approaches, fish hard‐part microchemistry and genetics, to quantify
effects of low‐use lock‐and‐dam structures on riverine fish movement. Each approach …
effects of low‐use lock‐and‐dam structures on riverine fish movement. Each approach …
A mobile sex‐determining region, male‐specific haplotypes and rearing environment influence age at maturity in Chinook salmon
Variation in age at maturity is an important contributor to life history and demographic
variation within and among species. The optimal age at maturity can vary by sex, and the …
variation within and among species. The optimal age at maturity can vary by sex, and the …