Phylogenomics

H Philippe, F Delsuc, H Brinkmann… - Annu. Rev. Ecol. Evol …, 2005 - annualreviews.org
▪ Abstract The continuous flow of genomic data is creating unprecedented opportunities for
the reconstruction of molecular phylogenies. Access to whole-genome data means that …

Phylogenetic analysis of mealybugs (Hemiptera: Coccoidea: Pseudococcidae) based on DNA sequences from three nuclear genes, and a review of the higher …

DA Downie, PJ Gullan - Systematic Entomology, 2004 - Wiley Online Library
Mealybugs (Hemiptera: Pseudococcidae) are small, plant‐sucking insects which comprise
the second largest family of scale insects (Coccoidea). Relationships among many …

Phylogeny, adaptive radiation, and historical biogeography in Bromeliaceae: insights from an eight‐locus plastid phylogeny

TJ Givnish, MHJ Barfuss, B Van Ee… - American journal of …, 2011 - Wiley Online Library
• Premise: Bromeliaceae form a large, ecologically diverse family of angiosperms native to
the New World. We use a bromeliad phylogeny based on eight plastid regions to analyze …

Phylogeny and diversification of the largest avian radiation

FK Barker, A Cibois, P Schikler, J Feinstein… - Proceedings of the …, 2004 - pnas.org
The order Passeriformes (“perching birds”) comprises extant species diversity comparable to
that of living mammals. For over a decade, a single phylogenetic hypothesis based on DNA …

Molecular Phylogeny of the Plant Pathogenic Genus Botrytis and the Evolution of Host Specificity

M Staats, P van Baarlen… - Molecular biology and …, 2005 - academic.oup.com
The cosmopolitan genus Botrytis contains 22 recognized species and one hybrid. The
current classification is largely based on morphological characters and, to a minor extent, on …

Evolution of the Core Genome of Pseudomonas syringae, a Highly Clonal, Endemic Plant Pathogen

SF Sarkar, DS Guttman - Applied and environmental microbiology, 2004 - journals.asm.org
Pseudomonas syringae is a common foliar bacterium responsible for many important plant
diseases. We studied the population structure and dynamics of the core genome of P …

A multilocus genealogical approach to phylogenetic species recognition in the model eukaryote Neurospora

JR Dettman, DJ Jacobson, JW Taylor - Evolution, 2003 - Wiley Online Library
To critically examine the relationship between species recognized by phylogenetic and
reproductive compatibility criteria, we applied phylogenetic species recognition (PSR) to the …

Phylogeny in cryptic weevils: molecules, morphology and new genera of western Palaearctic Cryptorhynchinae (Coleoptera: Curculionidae)

JJ Astrin, PE Stüben - Invertebrate systematics, 2008 - CSIRO Publishing
A phylogeny is presented for the western Palaearctic representatives of the weevil subfamily
Cryptorhynchinae using a combination of phenotypic and genotypic characters. This …

Phylogeny of Opuntia ss (Cactaceae): Clade delineation, geographic origins, and reticulate evolution

LC Majure, R Puente, MP Griffith… - American journal of …, 2012 - Wiley Online Library
• Premise of the study: The opuntias (nopales, prickly pears) are not only culturally,
ecologically, economically, and medicinally important, but are renowned for their taxonomic …

Population genetics and phylogenetic inference in bacterial molecular systematics: the roles of migration and recombination in Bradyrhizobium species cohesion and …

P Vinuesa, C Silva, D Werner… - Molecular Phylogenetics …, 2005 - Elsevier
A combination of population genetics and phylogenetic inference methods was used to
delineate Bradyrhizobium species and to uncover the evolutionary forces acting at the …