Modeling and simulation of genetic regulatory systems: a literature review

H De Jong - Journal of computational biology, 2002 - liebertpub.com
In order to understand the functioning of organisms on the molecular level, we need to know
which genes are expressed, when and where in the organism, and to which extent. The …

Engineered gene circuits

J Hasty, D McMillen, JJ Collins - Nature, 2002 - nature.com
A central focus of postgenomic research will be to understand how cellular phenomena
arise from the connectivity of genes and proteins. This connectivity generates molecular …

Self-organization

I Prigogine, G Nicolis - Non-equilibrium system, 1977 - tabis2013.ipb.ac.rs
КВАНТИФИКАЦИЈА САМООРГАНИЗАЦИЈЕ И КОМПЛЕКСНОСТИ ЗАСНОВАНА НА
ИЗБОРУ Page 1 SELF-ORGANIZATION AS A PROCESSING OF HIDDEN CAUSAL …

Neurons with graded response have collective computational properties like those of two-state neurons.

JJ Hopfield - Proceedings of the national academy of …, 1984 - National Acad Sciences
A model for a large network of" neurons" with a graded response (or sigmoid input-output
relation) is studied. This deterministic system has collective properties in very close …

Construction of a genetic toggle switch in Escherichia coli

TS Gardner, CR Cantor, JJ Collins - Nature, 2000 - nature.com
It has been proposed that gene-regulatory circuits with virtually any desired property can be
constructed from networks of simple regulatory elements. These properties, which include …

[BOOK][B] Chemical graph theory

N Trinajstic - 2018 - taylorfrancis.com
New Edition! Completely Revised and UpdatedChemical Graph Theory, 2nd Edition is a
completely revised and updated edition of a highly regarded book that has been widely …

[BOOK][B] Practical bifurcation and stability analysis

R Seydel - 2009 - books.google.com
Fifteen years have elapsed after the second edition of Practical Bifurcation and Stability
Analysis was published. During that time period the? eld of computational bifurcation has …

[BOOK][B] Understanding nonlinear dynamics

D Kaplan, L Glass - 1997 - books.google.com
Mathematics is playing an ever more important role in the physical and biological sciences,
provoking a blurring of boundaries between scientific disciplines and a resurgence of …

Genetic network inference: from co-expression clustering to reverse engineering

P D'haeseleer, S Liang, R Somogyi - Bioinformatics, 2000 - academic.oup.com
Abstract motivation: Advances in molecular biological, analytical and computational
technologies are enabling us to systematically investigate the complex molecular processes …

Computational studies of gene regulatory networks: in numero molecular biology

J Hasty, D McMillen, F Isaacs, JJ Collins - Nature Reviews Genetics, 2001 - nature.com
Remarkable progress in genomic research is leading to a complete map of the building
blocks of biology. Knowledge of this map is, in turn, setting the stage for a fundamental …