MEA-NAP: A flexible network analysis pipeline for neuronal 2D and 3D organoid multielectrode recordings

TPH Sit, RC Feord, AWE Dunn, J Chabros… - Cell Reports …, 2024 - cell.com
Microelectrode array (MEA) recordings are commonly used to compare firing and burst rates
in neuronal cultures. MEA recordings can also reveal microscale functional connectivity …

A semi-supervised approach to fault diagnosis for chemical processes

I Monroy, R Benitez, G Escudero, M Graells - Computers & Chemical …, 2010 - Elsevier
A new methodology for improving the performance of fault diagnosis systems (FDS) has
been proposed by combining both supervised and unsupervised learning methods. Within …

An automatic measure for classifying clusters of suspected spikes into single cells versus multiunits

A Tankus, Y Yeshurun, I Fried - Journal of neural engineering, 2009 - iopscience.iop.org
While automatic spike sorting has been investigated for decades, little attention has been
allotted to consistent evaluation criteria that will automatically determine whether a cluster of …

Novel use of matched filtering for synaptic event detection and extraction

Y Shi, Z Nenadic, X Xu - PLoS One, 2010 - journals.plos.org
Efficient and dependable methods for detection and measurement of synaptic events are
important for studies of synaptic physiology and neuronal circuit connectivity. As the …

A multiscale correlation of wavelet coefficients approach to spike detection

C Yang, B Olson, J Si - Neural computation, 2011 - direct.mit.edu
Extracellular chronic recordings have been used as important evidence in neuroscientific
studies to unveil the fundamental neural network mechanisms in the brain. Spike detection …

Optimizing the automatic selection of spike detection thresholds using a multiple of the noise level

M Rizk, PD Wolf - Medical & biological engineering & computing, 2009 - Springer
Thresholding is an often-used method of spike detection for implantable neural signal
processors due to its computational simplicity. A means for automatically selecting the …

An efficient algorithm for current source localization with tetrodes

CW Lee, H Dang, Z Nenadic - 2007 29th Annual International …, 2007 - ieeexplore.ieee.org
In this article we develop a simple algorithm for localization of electrical sources in neurons.
The algorithm is based on multiple measurements of neuron's action potentials acquired …

[HTML][HTML] MEA-NAP compares microscale functional connectivity, topology, and network dynamics in organoid or monolayer neuronal cultures

TPH Sit, RC Feord, AWE Dunn, J Chabros, D Oluigbo… - bioRxiv, 2024 - ncbi.nlm.nih.gov
Microelectrode array (MEA) recordings are commonly used to compare firing and burst rates
in neuronal cultures. MEA recordings can also reveal microscale functional connectivity …

Robust spike classification based on frequency domain neural waveform features

C Yang, Y Yuan, J Si - Journal of neural engineering, 2013 - iopscience.iop.org
Objective. We introduce a new spike classification algorithm based on frequency domain
features of the spike snippets. The goal for the algorithm is to provide high classification …

Mean Scatterer spacing estimation using Cepstrum-based continuous wavelet transform

R Nasr, O Falou, A Shahin, E Hysi… - IEEE Transactions …, 2020 - ieeexplore.ieee.org
The goal of this study was to develop an ultrasound (US) scatterer spacing estimation
method using an enhanced cepstral analysis based on continuous wavelet transforms …