Epistasis in protein evolution

TN Starr, JW Thornton - Protein science, 2016 - Wiley Online Library
The structure, function, and evolution of proteins depend on physical and genetic
interactions among amino acids. Recent studies have used new strategies to explore the …

Evolutionary pathways and trajectories in antibiotic resistance

F Baquero, JL Martinez, V F. Lanza… - Clinical Microbiology …, 2021 - Am Soc Microbiol
Evolution is the hallmark of life. Descriptions of the evolution of microorganisms have
provided a wealth of information, but knowledge regarding “what happened” has precluded …

Empirical fitness landscapes and the predictability of evolution

JAGM De Visser, J Krug - Nature Reviews Genetics, 2014 - nature.com
The genotype–fitness map (that is, the fitness landscape) is a key determinant of evolution,
yet it has mostly been used as a superficial metaphor because we know little about its …

Epistasis and adaptation on fitness landscapes

C Bank - Annual Review of Ecology, Evolution, and Systematics, 2022 - annualreviews.org
Epistasis occurs when the effect of a mutation depends on its carrier's genetic background.
Despite increasing evidence that epistasis for fitness is common, its role during evolution is …

Idiosyncratic and dose-dependent epistasis drives variation in tomato fruit size

L Aguirre, A Hendelman, SF Hutton, DM McCandlish… - Science, 2023 - science.org
Epistasis between genes is traditionally studied with mutations that eliminate protein activity,
but most natural genetic variation is in cis-regulatory DNA and influences gene expression …

[LIVRE][B] Population genetics and microevolutionary theory

AR Templeton - 2021 - books.google.com
Population Genetics and Microevolutionary Theory Explore the fundamentals of the
biological implications of population genetic theory In the newly revised Second Edition of …

How mutational epistasis impairs predictability in protein evolution and design

CM Miton, N Tokuriki - Protein Science, 2016 - Wiley Online Library
There has been much debate about the extent to which mutational epistasis, that is, the
dependence of the outcome of a mutation on the genetic background, constrains …

Global epistasis emerges from a generic model of a complex trait

G Reddy, MM Desai - Elife, 2021 - elifesciences.org
Epistasis between mutations can make adaptation contingent on evolutionary history. Yet
despite widespread 'microscopic'epistasis between the mutations involved, microbial …

Contingency and entrenchment in protein evolution under purifying selection

P Shah, DM McCandlish… - Proceedings of the …, 2015 - National Acad Sciences
The phenotypic effect of an allele at one genetic site may depend on alleles at other sites, a
phenomenon known as epistasis. Epistasis can profoundly influence the process of …

An experimental assay of the interactions of amino acids from orthologous sequences sha** a complex fitness landscape

VO Pokusaeva, DR Usmanova, EV Putintseva… - PLoS …, 2019 - journals.plos.org
Characterizing the fitness landscape, a representation of fitness for a large set of genotypes,
is key to understanding how genetic information is interpreted to create functional …