Autophagy and cancer drug resistance in dialogue: pre-clinical and clinical evidence

Y Qin, M Ashrafizadeh, V Mongiardini, B Grimaldi… - Cancer letters, 2023 - Elsevier
The emergence of drug resistance is a major challenge for oncologists. Resistance can be
categorized as acquired or intrinsic; the alteration of several biological mechanisms …

Intrinsic disorder-based protein interactions and their modulators

VN Uversky - Current pharmaceutical design, 2013 - ingentaconnect.com
It is clear now that proteins lacking ordered structure, generally known as intrinsically
disordered proteins (IDPs), possess numerous biological functions that complement …

Rosetta FlexPepDock web server—high resolution modeling of peptide–protein interactions

N London, B Raveh, E Cohen, G Fathi… - Nucleic acids …, 2011 - academic.oup.com
Peptide–protein interactions are among the most prevalent and important interactions in the
cell, but a large fraction of those interactions lack detailed structural characterization. The …

Sub‐angstrom modeling of complexes between flexible peptides and globular proteins

B Raveh, N London… - … : Structure, Function, and …, 2010 - Wiley Online Library
A wide range of regulatory processes in the cell are mediated by flexible peptides that fold
upon binding to globular proteins. Computational efforts to model these interactions are …

Phosphotyrosine interactome of the ErbB‐receptor kinase family

WX Schulze, L Deng, M Mann - Molecular systems biology, 2005 - embopress.org
Interactions between short modified peptide motifs and modular protein domains are central
events in cell signal‐transduction. We determined interaction partners to all cytosolic …

The structure and function of proline recognition domains

A Zarrinpar, RP Bhattacharyya, WA Lim - Science's STKE, 2003 - science.org
One particularly abundant group of modular recognition domains consists of those that bind
proline-rich motifs. Such modules, including the SH3, WW, and EVH1 domains, play a …

Gating of the rapid shade-avoidance response by the circadian clock in plants

MG Salter, KA Franklin, GC Whitelam - Nature, 2003 - nature.com
The phytochromes are a family of plant photoreceptor proteins that control several adaptive
developmental strategies,. For example, the phytochromes perceive far-red light …

Optimization of specificity in a cellular protein interaction network by negative selection

A Zarrinpar, SH Park, WA Lim - Nature, 2003 - nature.com
Most proteins that participate in cellular signalling networks contain modular protein-
interaction domains. Multiple versions of such domains are present within a given organism …

A systematic compilation of human SH3 domains: a versatile superfamily in cellular signaling

M Mehrabipour, NSK Jasemi, R Dvorsky… - Cells, 2023 - mdpi.com
SRC homology 3 (SH3) domains are fundamental modules that enable the assembly of
protein complexes through physical interactions with a pool of proline-rich/noncanonical …

A novel proteomic screen for peptide-protein interactions

WX Schulze, M Mann - Journal of Biological Chemistry, 2004 - ASBMB
Regulated interactions between short, unstructured amino acid sequences and modular
protein domains are central to cell signaling. Here we use synthetic peptides in" active"(eg …