The best practice for microbiome analysis using R

T Wen, G Niu, T Chen, Q Shen, J Yuan, YX Liu - Protein & Cell, 2023 - academic.oup.com
With the gradual maturity of sequencing technology, many microbiome studies have
published, driving the emergence and advance of related analysis tools. R language is the …

Wekemo Bioincloud: A user‐friendly platform for meta‐omics data analyses

Y Gao, G Zhang, S Jiang, YX Liu - Imeta, 2024 - Wiley Online Library
The increasing application of meta‐omics approaches to investigate the structure, function,
and intercellular interactions of microbial communities has led to a surge in available data …

Network complexity and stability of microbes enhanced by microplastic diversity

H Wu, T Gao, A Hu, J Wang - Environmental science & technology, 2024 - ACS Publications
Microplastic mixtures are ubiquitously distributed in global ecosystems and include varying
types. However, it remains unknown how microplastic diversity affects the biotic interactions …

EasyAmplicon: An easy‐to‐use, open‐source, reproducible, and community‐based pipeline for amplicon data analysis in microbiome research

YX Liu, L Chen, T Ma, X Li, M Zheng, X Zhou, L Chen… - Imeta, 2023 - Wiley Online Library
It is difficult for beginners to learn and use amplicon analysis software because there are so
many software tools to choose from, and all of them need multiple steps of operation. Herein …

Intercrop** enhances maize growth and nutrient uptake by driving the link between rhizosphere metabolites and microbiomes

P Jiang, Y Wang, Y Zhang, J Fei, X Rong… - New …, 2024 - Wiley Online Library
Intercrop** leads to different plant roots directly influencing belowground processes and
has gained interest for its promotion of increased crop yields and resource utilization …

Deciphering microbial community and nitrogen fixation in the legume rhizosphere

Y Yang, N Xu, Z Zhang, C Lei, B Chen… - Journal of Agricultural …, 2024 - ACS Publications
Nitrogen is the most limiting factor in crop production. Legumes establish a symbiotic
relationship with rhizobia and enhance nitrogen fixation. We analyzed 1,624 rhizosphere …