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Genomic analysis of the potential for aromatic compounds biodegradation in Burkholderiales
The relevance of the β‐proteobacterial Burkholderiales order in the degradation of a vast
array of aromatic compounds, including several priority pollutants, has been largely …
array of aromatic compounds, including several priority pollutants, has been largely …
Detecting genomic islands using bioinformatics approaches
Bacterial genomes contain clusters of genes that are acquired by horizontal transfer, called
genomic islands (GIs). GIs are frequently associated with microbial adaptations that are of …
genomic islands (GIs). GIs are frequently associated with microbial adaptations that are of …
IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets
Abstract IslandViewer (http://www. pathogenomics. sfu. ca/islandviewer/) is a widely-used
webserver for the prediction and interactive visualization of genomic islands (GIs, regions of …
webserver for the prediction and interactive visualization of genomic islands (GIs, regions of …
Structure, function and diversity of the healthy human microbiome
nature, 2012 - nature.com
Studies of the human microbiome have revealed that even healthy individuals differ
remarkably in the microbes that occupy habitats such as the gut, skin and vagina. Much of …
remarkably in the microbes that occupy habitats such as the gut, skin and vagina. Much of …
Ecology of marine Bacteroidetes: a comparative genomics approach
Bacteroidetes are commonly assumed to be specialized in degrading high molecular weight
(HMW) compounds and to have a preference for growth attached to particles, surfaces or …
(HMW) compounds and to have a preference for growth attached to particles, surfaces or …
CRISPRTarget: bioinformatic prediction and analysis of crRNA targets
The bacterial and archaeal CRISPR/Cas adaptive immune system targets specific
protospacer nucleotide sequences in invading organisms. This requires base pairing …
protospacer nucleotide sequences in invading organisms. This requires base pairing …
Pseudomonas Genome Database: improved comparative analysis and population genomics capability for Pseudomonas genomes
GL Winsor, DKW Lam, L Fleming, R Lo… - Nucleic acids …, 2010 - academic.oup.com
Pseudomonas is a metabolically-diverse genus of bacteria known for its flexibility and
leading free living to pathogenic lifestyles in a wide range of hosts. The Pseudomonas …
leading free living to pathogenic lifestyles in a wide range of hosts. The Pseudomonas …
Biodegradation of naphthalene, BTEX, and aliphatic hydrocarbons by Paraburkholderia aromaticivorans BN5 isolated from petroleum-contaminated soil
To isolate bacteria responsible for the biodegradation of naphthalene, BTEX (benzene,
toluene, ethylbenzene, and o-, m-, and p-xylene), and aliphatic hydrocarbons in petroleum …
toluene, ethylbenzene, and o-, m-, and p-xylene), and aliphatic hydrocarbons in petroleum …
IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis
Abstract IslandViewer (http://pathogenomics. sfu. ca/islandviewer) is a widely used web-
based resource for the prediction and analysis of genomic islands (GIs) in bacterial and …
based resource for the prediction and analysis of genomic islands (GIs) in bacterial and …
Diverse alkane hydroxylase genes in microorganisms and environments
AlkB and CYP153 are important alkane hydroxylases responsible for aerobic alkane
degradation in bioremediation of oil-polluted environments and microbial enhanced oil …
degradation in bioremediation of oil-polluted environments and microbial enhanced oil …