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[HTML][HTML] Force field development for lipid membrane simulations
AP Lyubartsev, AL Rabinovich - Biochimica et Biophysica Acta (BBA) …, 2016 - Elsevier
With the rapid development of computer power and wide availability of modelling software
computer simulations of realistic models of lipid membranes, including their interactions with …
computer simulations of realistic models of lipid membranes, including their interactions with …
[HTML][HTML] On the coupling between mechanical properties and electrostatics in biological membranes
Cell membrane structure is proposed as a lipid matrix with embedded proteins, and thus,
their emerging mechanical and electrostatic properties are commanded by lipid behavior …
their emerging mechanical and electrostatic properties are commanded by lipid behavior …
Physical properties of model biological lipid bilayers: insights from all-atom molecular dynamics simulations
The physical properties of lipid bilayers are sensitive to the specific type and composition of
the lipids that make up the many different types of cell membranes. Studying model bilayers …
the lipids that make up the many different types of cell membranes. Studying model bilayers …
Electroporation of the E. coli and S. aureus membranes: molecular dynamics simulations of complex bacterial membranes
Bacterial membranes are complex organelles composed of a variety of lipid types. The
differences in their composition are a key factor in determining their relative permeabilities …
differences in their composition are a key factor in determining their relative permeabilities …
[HTML][HTML] Molecular structures of fluid phase phosphatidylglycerol bilayers as determined by small angle neutron and X-ray scattering
We have determined the molecular structures of commonly used phosphatidylglycerols
(PGs) in the commonly accepted biologically relevant fluid phase. This was done by …
(PGs) in the commonly accepted biologically relevant fluid phase. This was done by …
Lipid models for united-atom molecular dynamics simulations of proteins
A Kukol - Journal of Chemical Theory and Computation, 2009 - ACS Publications
United-atom force fields for molecular dynamics (MD) simulations provide a higher
computational efficiency, especially in lipid membrane simulations, with little sacrifice in …
computational efficiency, especially in lipid membrane simulations, with little sacrifice in …
Ionic Surfactant Aggregates in Saline Solutions: Sodium Dodecyl Sulfate (SDS) in the Presence of Excess Sodium Chloride (NaCl) or Calcium Chloride (CaCl2)
The properties of sodium dodecyl sulfate (SDS) aggregates in saline solutions of excess
sodium chloride (NaCl) or calcium chloride (CaCl2) ions were studied through extensive …
sodium chloride (NaCl) or calcium chloride (CaCl2) ions were studied through extensive …
Insights into the polyhexamethylene biguanide (PHMB) mechanism of action on bacterial membrane and DNA: A molecular dynamics study
Polyhexamethylene biguanide (PHMB) is a cationic polymer with antimicrobial and antiviral
properties. It has been commonly accepted that the antimicrobial activity is due to the ability …
properties. It has been commonly accepted that the antimicrobial activity is due to the ability …
Enhanced photocatalytic and antibacterial activity of acridinium-grafted g-C3N4 with broad-spectrum light absorption for antimicrobial photocatalytic therapy
J Guo, J Zhou, Z Sun, M Wang, X Zou, H Mao, F Yan - Acta Biomaterialia, 2022 - Elsevier
As a metal-free polymeric photocatalyst, graphitic carbon nitride (gC 3 N 4) has attracted
great attention owing to its high stability and low toxicity. However, gC 3 N 4 suffers from low …
great attention owing to its high stability and low toxicity. However, gC 3 N 4 suffers from low …
Structural properties of ionic detergent aggregates: a large-scale molecular dynamics study of sodium dodecyl sulfate
The properties of sodium dodecyl sulfate (SDS) aggregates were studied through extensive
molecular dynamics simulations with explicit solvent. First, we provide a parametrization of …
molecular dynamics simulations with explicit solvent. First, we provide a parametrization of …