How RNA-binding proteins interact with RNA: molecules and mechanisms

M Corley, MC Burns, GW Yeo - Molecular cell, 2020 - cell.com
RNA-binding proteins (RBPs) comprise a large class of over 2,000 proteins that interact with
transcripts in all manner of RNA-driven processes. The structures and mechanisms that …

Post-transcriptional regulatory functions of mammalian pumilio proteins

AC Goldstrohm, TMT Hall, KM McKenney - TRENDS in Genetics, 2018 - cell.com
Mammalian Pumilio proteins, PUM1 and PUM2, are members of the PUF family of sequence-
specific RNA-binding proteins. In this review, we explore their mechanisms, regulatory …

Efficient, specific, and combinatorial control of endogenous exon splicing with dCasRx-RBM25

JD Li, M Taipale, BJ Blencowe - Molecular Cell, 2024 - cell.com
Efficient targeted control of splicing is a major goal of functional genomics and therapeutic
applications. Guide (g) RNA-directed, deactivated (d) Cas CRISPR enzymes fused to …

Optogenetic control of RNA function and metabolism using engineered light-switchable RNA-binding proteins

R Liu, J Yang, J Yao, Z Zhao, W He, N Su… - Nature …, 2022 - nature.com
RNA-binding proteins (RBPs) play an essential role in regulating the function of RNAs in a
cellular context, but our ability to control RBP activity in time and space is limited. Here, we …

A quantitative and predictive model for RNA binding by human Pumilio proteins

I Jarmoskaite, SK Denny, PP Vaidyanathan… - Molecular Cell, 2019 - cell.com
High-throughput methodologies have enabled routine generation of RNA target sets and
sequence motifs for RNA-binding proteins (RBPs). Nevertheless, quantitative approaches …

The role and mechanism of RNA-binding proteins in bone metabolism and osteoporosis

J Wu, L Niu, K Yang, J Xu, D Zhang, J Ling, P **a… - Ageing Research …, 2024 - Elsevier
Osteoporosis is a prevalent chronic metabolic bone disease that poses a significant risk of
fractures or mortality in elderly individuals. Its pathophysiological basis is often attributed to …

Engineering the composition and fate of wild populations with gene drive

BA Hay, G Oberhofer, M Guo - Annual Review of Entomology, 2021 - annualreviews.org
Insects play important roles as predators, prey, pollinators, recyclers, hosts, parasitoids, and
sources of economically important products. They can also destroy crops; wound animals; …

Systematic discovery of DNA-binding tandem repeat proteins<? mode longmeta?>

X Hu, X Zhang, W Sun, C Liu, P Deng… - Nucleic Acids …, 2024 - academic.oup.com
Tandem repeat proteins (TRPs) are widely distributed and bind to a wide variety of ligands.
DNA-binding TRPs such as zinc finger (ZNF) and transcription activator-like effector (TALE) …

Ribonucleoprotein capture by in vivo expression of a designer pentatricopeptide repeat protein in Arabidopsis

JJ McDermott, KP Watkins, R Williams-Carrier… - The Plant …, 2019 - academic.oup.com
Pentatricopeptide repeat (PPR) proteins bind RNA via a mechanism that facilitates the
customization of sequence specificity. However, natural PPR proteins have irregular …

[HTML][HTML] RNA-centric methods: toward the interactome of specific RNA transcripts

C Gräwe, S Stelloo, FAH van Hout, M Vermeulen - Trends in biotechnology, 2021 - cell.com
RNA–protein interactions play an important role in numerous cellular processes in health
and disease. In recent years, the global RNA-bound proteome has been extensively studied …