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Uncovering ecological state dynamics with hidden Markov models
Ecological systems can often be characterised by changes among a finite set of underlying
states pertaining to individuals, populations, communities or entire ecosystems through time …
states pertaining to individuals, populations, communities or entire ecosystems through time …
Advances and applications of occupancy models
The past decade has seen an explosion in the development and application of models
aimed at estimating species occurrence and occupancy dynamics while accounting for …
aimed at estimating species occurrence and occupancy dynamics while accounting for …
Improving occupancy estimation when two types of observational error occur: Non‐detection and species misidentification
Efforts to draw inferences about species occurrence frequently account for false negatives,
the common situation when individuals of a species are not detected even when a site is …
the common situation when individuals of a species are not detected even when a site is …
Site occupancy models in the analysis of environmental DNA presence/absence surveys: a case study of an emerging amphibian pathogen
The use of environmental DNA (eDNA) to detect species in aquatic environments such as
ponds and streams is a powerful new technique with many benefits. However, species …
ponds and streams is a powerful new technique with many benefits. However, species …
Statistical approaches to account for false‐positive errors in environmental DNA samples
Environmental DNA (eDNA) sampling is prone to both false‐positive and false‐negative
errors. We review statistical methods to account for such errors in the analysis of eDNA data …
errors. We review statistical methods to account for such errors in the analysis of eDNA data …
Occupancy models for citizen‐science data
Large‐scale citizen‐science projects, such as atlases of species distribution, are an
important source of data for macroecological research, for understanding the effects of …
important source of data for macroecological research, for understanding the effects of …
Dealing with false‐positive and false‐negative errors about species occurrence at multiple levels
Accurate knowledge of species occurrence is fundamental to a wide variety of ecological,
evolutionary and conservation applications. Assessing the presence or absence of species …
evolutionary and conservation applications. Assessing the presence or absence of species …
Evaluation of detection probabilities at the water-filtering and initial PCR steps in environmental DNA metabarcoding using a multispecies site occupancy model
Environmental DNA (eDNA) metabarcoding is a recently developed method to assess
biodiversity based on a high-throughput parallel DNA sequencing applied to DNA present in …
biodiversity based on a high-throughput parallel DNA sequencing applied to DNA present in …
Outbreak of peste des petits ruminants among critically endangered Mongolian saiga and other wild ungulates, Mongolia, 2016–2017
M Pruvot, AE Fine, C Hollinger… - Emerging infectious …, 2020 - pmc.ncbi.nlm.nih.gov
The 2016–2017 introduction of peste des petits ruminants virus (PPRV) into livestock in
Mongolia was followed by mass mortality of the critically endangered Mongolian saiga …
Mongolia was followed by mass mortality of the critically endangered Mongolian saiga …
Modeling false positive detections in species occurrence data under different study designs
The occurrence of false positive detections in presence–absence data, even when they
occur infrequently, can lead to severe bias when estimating species occupancy patterns …
occur infrequently, can lead to severe bias when estimating species occupancy patterns …