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CHARMM-GUI Membrane Builder: Past, Current, and Future Developments and Applications
Molecular dynamics simulations of membranes and membrane proteins serve as
computational microscopes, revealing coordinated events at the membrane interface. As G …
computational microscopes, revealing coordinated events at the membrane interface. As G …
CHARMM at 45: Enhancements in accessibility, functionality, and speed
Since its inception nearly a half century ago, CHARMM has been playing a central role in
computational biochemistry and biophysics. Commensurate with the developments in …
computational biochemistry and biophysics. Commensurate with the developments in …
[HTML][HTML] Molecular recognition of morphine and fentanyl by the human μ-opioid receptor
Morphine and fentanyl are among the most used opioid drugs that confer analgesia and
unwanted side effects through both G protein and arrestin signaling pathways of μ-opioid …
unwanted side effects through both G protein and arrestin signaling pathways of μ-opioid …
A single mutation in dairy cow-associated H5N1 viruses increases receptor binding breadth
MR Good, ML Fernández-Quintero, W Ji… - Nature …, 2024 - nature.com
Abstract Clade 2.3. 4.4 b H5N1 is causing an unprecedented outbreak in dairy cows in the
United States. To understand if recent H5N1 viruses are changing their receptor use, we …
United States. To understand if recent H5N1 viruses are changing their receptor use, we …
CHARMM-GUI PDB manipulator: various PDB structural modifications for biomolecular modeling and simulation
Molecular modeling and simulation play important roles in biomedical research as they
provide molecular-level insight into the underlying mechanisms of biological functions that …
provide molecular-level insight into the underlying mechanisms of biological functions that …
CHARMM-GUI nanomaterial modeler for modeling and simulation of nanomaterial systems
Molecular modeling and simulation are invaluable tools for nanoscience that predict
mechanical, physicochemical, and thermodynamic properties of nanomaterials and provide …
mechanical, physicochemical, and thermodynamic properties of nanomaterials and provide …
O-GlcNAcylation promotes pancreatic tumor growth by regulating malate dehydrogenase 1
Q Zhu, H Zhou, L Wu, Z Lai, D Geng, W Yang… - Nature Chemical …, 2022 - nature.com
Oncogenic Kras-activated pancreatic ductal adenocarcinoma (PDAC) cells highly rely on an
unconventional glutamine catabolic pathway to sustain cell growth. However, little is known …
unconventional glutamine catabolic pathway to sustain cell growth. However, little is known …
A perspective on sustainable computational chemistry software development and integration
The power of quantum chemistry to predict the ground and excited state properties of
complex chemical systems has driven the development of computational quantum chemistry …
complex chemical systems has driven the development of computational quantum chemistry …
Methotrexate recognition by the human reduced folate carrier SLC19A1
Folates are essential nutrients with important roles as cofactors in one-carbon transfer
reactions, being heavily utilized in the synthesis of nucleic acids and the metabolism of …
reactions, being heavily utilized in the synthesis of nucleic acids and the metabolism of …
Structural insights into ligand recognition and activation of the medium-chain fatty acid-sensing receptor GPR84
GPR84 is an orphan class AG protein-coupled receptor (GPCR) that is predominantly
expressed in immune cells and plays important roles in inflammation, fibrosis, and …
expressed in immune cells and plays important roles in inflammation, fibrosis, and …