Bacteria and archaea on Earth and their abundance in biofilms

HC Flemming, S Wuertz - Nature Reviews Microbiology, 2019 - nature.com
Biofilms are a form of collective life with emergent properties that confer many advantages
on their inhabitants, and they represent a much higher level of organization than single cells …

The microbiomes of deep-sea hydrothermal vents: distributed globally, shaped locally

GJ Dick - Nature Reviews Microbiology, 2019 - nature.com
The discovery of chemosynthetic ecosystems at deep-sea hydrothermal vents in 1977
changed our view of biology. Chemosynthetic bacteria and archaea form the foundation of …

Global diversity of microbial communities in marine sediment

T Hoshino, H Doi, GI Uramoto… - Proceedings of the …, 2020 - National Acad Sciences
Microbial life in marine sediment contributes substantially to global biomass and is a crucial
component of the Earth system. Subseafloor sediment includes both aerobic and anaerobic …

High proportions of bacteria and archaea across most biomes remain uncultured

AD Steen, A Crits-Christoph, P Carini… - The ISME …, 2019 - academic.oup.com
A recent paper by Martiny argues that “high proportions” of bacteria in diverse Earth
environments have been cultured. Here we reanalyze a portion of the data in that paper, and …

Microbial ecology of the dark ocean above, at, and below the seafloor

BN Orcutt, JB Sylvan, NJ Knab… - … and molecular biology …, 2011 - Am Soc Microbiol
The majority of life on Earth—notably, microbial life—occurs in places that do not receive
sunlight, with the habitats of the oceans being the largest of these reservoirs. Sunlight …

High proportions of bacteria are culturable across major biomes

AC Martiny - The ISME Journal, 2019 - academic.oup.com
The paradigm that only 1% of microbes are culturable has had a profound impact on our
understanding of microbial ecology and is still a major motivation for mostly using molecular …

Comparison of species richness estimates obtained using nearly complete fragments and simulated pyrosequencing-generated fragments in 16S rRNA gene-based …

N Youssef, CS Sheik, LR Krumholz… - Applied and …, 2009 - Am Soc Microbiol
Pyrosequencing-based 16S rRNA gene surveys are increasingly utilized to study highly
diverse bacterial communities, with special emphasis on utilizing the large number of …

The diversity of coral reefs: what are we missing?

L Plaisance, MJ Caley, RE Brainard, N Knowlton - PloS one, 2011 - journals.plos.org
Tropical reefs shelter one quarter to one third of all marine species but one third of the coral
species that construct reefs are now at risk of extinction. Because traditional methods for …

Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil

S Uroz, M Buée, C Murat, P Frey‐Klett… - Environmental …, 2010 - Wiley Online Library
Several reports have highlighted that forest soil samples are more phylum‐rich than
agricultural soil samples. However, little is known about the structure and richness of the …

Evolutionary limits to cooperation in microbial communities

NM Oliveira, R Niehus… - Proceedings of the …, 2014 - National Acad Sciences
Microbes produce many compounds that are costly to a focal cell but promote the survival
and reproduction of neighboring cells. This observation has led to the suggestion that …