Metabolomics: a primer

X Liu, JW Locasale - Trends in biochemical sciences, 2017 - cell.com
Metabolomics generates a profile of small molecules that are derived from cellular
metabolism and can directly reflect the outcome of complex networks of biochemical …

Regulation of mammalian nucleotide metabolism and biosynthesis

AN Lane, TWM Fan - Nucleic acids research, 2015 - academic.oup.com
Nucleotides are required for a wide variety of biological processes and are constantly
synthesized de novo in all cells. When cells proliferate, increased nucleotide synthesis is …

From correlation to causation: analysis of metabolomics data using systems biology approaches

A Rosato, L Tenori, M Cascante, PR De Atauri Carulla… - Metabolomics, 2018 - Springer
Introduction Metabolomics is a well-established tool in systems biology, especially in the top–
down approach. Metabolomics experiments often results in discovery studies that provide …

Combined nuclear magnetic resonance spectroscopy and mass spectrometry approaches for metabolomics

MPM Letertre, G Dervilly, P Giraudeau - Analytical chemistry, 2020 - ACS Publications
Metabolomics is based on cutting-edge analytical methods that provide a “snapshot” of all
the detectable metabolites, small molecules generally weighing under 1200 Da, present in …

Mitochondrial DNA alterations underlie an irreversible shift to aerobic glycolysis in fumarate hydratase–deficient renal cancer

DR Crooks, N Maio, M Lang, CJ Ricketts, CD Vocke… - Science …, 2021 - science.org
Understanding the mechanisms of the Warburg shift to aerobic glycolysis is critical to
defining the metabolic basis of cancer. Hereditary leiomyomatosis and renal cell carcinoma …

[HTML][HTML] APOE alters glucose flux through central carbon pathways in astrocytes

HC Williams, BC Farmer, MA Piron, AE Walsh… - Neurobiology of …, 2020 - Elsevier
Abstract The Apolipoprotein E (APOE) gene is a major genetic risk factor associated with
Alzheimer's disease (AD). APOE encodes for three main isoforms in humans (E2, E3, and …

A review of metabolism-associated biomarkers in lung cancer diagnosis and treatment

S Bamji-Stocke, V van Berkel, DM Miller, HB Frieboes - Metabolomics, 2018 - Springer
Introduction Lung cancer continues to be the leading cause of cancer-related mortality
worldwide. Early detection has proven essential to extend survival. Genomic and proteomic …

Acute loss of iron–sulfur clusters results in metabolic reprogramming and generation of lipid droplets in mammalian cells

DR Crooks, N Maio, AN Lane, M Jarnik… - Journal of Biological …, 2018 - jbc.org
Iron–sulfur (Fe-S) clusters are ancient cofactors in cells and participate in diverse
biochemical functions, including electron transfer and enzymatic catalysis. Although cell …

[HTML][HTML] Exploring cancer metabolism using stable isotope-resolved metabolomics (SIRM)

RC Bruntz, AN Lane, RM Higashi, TWM Fan - Journal of Biological …, 2017 - Elsevier
Metabolic reprogramming is a hallmark of cancer. The changes in metabolism are adaptive
to permit proliferation, survival, and eventually metastasis in a harsh environment. Stable …

Stable isotope-resolved metabolomics analyses of metabolic phenotypes reveal variable glutamine metabolism in different patient-derived models of non-small cell …

CJ Kinslow, MB Ll, Y Cai, J Yan, PK Lorkiewicz… - Metabolomics, 2024 - Springer
Introduction Stable isotope tracers have been increasingly used in preclinical cancer model
systems, including cell culture and mouse xenografts, to probe the altered metabolism of a …