The Shewanella genus: ubiquitous organisms sustaining and preserving aquatic ecosystems

ON Lemaire, V Méjean… - FEMS microbiology …, 2020 - academic.oup.com
ABSTRACT The Gram-negative Shewanella bacterial genus currently includes about 70
species of mostly aquatic γ-proteobacteria, which were isolated around the globe in a …

[PDF][PDF] A review of pangenome tools and recent studies

GS Vernikos - The pangenome: diversity, dynamics and evolution …, 2020 - library.oapen.org
With the advance of sequencing technologies, the landscape of genomic analysis has been
transformed, by moving from single strain to species (or even higher taxa)-wide genomic …

Carbon steel corrosion by bacteria from failed seal rings at an offshore facility

SJ Salgar-Chaparro, A Darwin, AH Kaksonen… - Scientific reports, 2020 - nature.com
Corrosion of carbon steel by microorganisms recovered from corroded seal rings at an
offshore floating production facility was investigated. Microbial diversity profiling revealed …

Identification of potential novel therapeutic drug target against Elizabethkingia anophelis by integrative pan and subtractive genomic analysis: An in silico approach

P Sarker, A Mitro, H Hoque, MN Hasan… - Computers in Biology …, 2023 - Elsevier
Elizabethkingia anophelis is a human pathogen responsible for severe nosocomial
infections in neonates and immunocompromised patients. The significantly higher mortality …

Comparative Genomics and Pan-Genomics of the Myxococcaceae, including a Description of Five Novel Species: Myxococcus eversor sp. nov., Myxococcus …

J Chambers, N Sparks, N Sydney… - Genome Biology and …, 2020 - academic.oup.com
Members of the predatory Myxococcales (myxobacteria) possess large genomes, undergo
multicellular development, and produce diverse secondary metabolites, which are being …

Pangenome analysis of Shewanella xiamenensis revealed important genetic traits concerning genetic diversity, pathogenicity and antibiotic resistance

H Wang, F **a, Y **a, J Li, Y Hu, Y Deng, M Zou - BMC genomics, 2024 - Springer
Background Shewanella xiamenensis, widely distributed in natural environments, has long
been considered as opportunistic pathogen. Recently, significant changes in the resistance …

Probiotic potentials of the silkworm gut symbiont Enterococcus casseliflavus ECB140, a promising L‐tryptophan producer living inside the host

X Liang, J He, N Zhang, A Muhammad… - Journal of Applied …, 2022 - academic.oup.com
Aims L‐tryptophan is an essential aromatic amino acid for the growth and development of
animals. Studies about enteric L‐tryptophan‐producing bacteria are scarce. In this report …

Comprehensive analysis of 84 Faecalibacterium prausnitzii strains uncovers their genetic diversity, functional characteristics, and potential risks

Z Bai, N Zhang, Y **, L Chen, Y Mao, L Sun… - Frontiers in Cellular …, 2023 - frontiersin.org
Faecalibacterium prausnitzii is a beneficial human gut microbe and a candidate for next-
generation probiotics. With probiotics now being used in clinical treatments, concerns about …

ProPan: a comprehensive database for profiling prokaryotic pan-genome dynamics

Y Zhang, H Zhang, Z Zhang, Q Qian… - Nucleic Acids …, 2023 - academic.oup.com
Compared with conventional comparative genomics, the recent studies in pan-genomics
have provided further insights into species genomic dynamics, taxonomy and identification …