[HTML][HTML] Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods
Environmental DNA (eDNA) metabarcoding (parallel sequencing of DNA/RNA for
identification of whole communities within a targeted group) is revolutionizing the field of …
identification of whole communities within a targeted group) is revolutionizing the field of …
MiFish metabarcoding: a high-throughput approach for simultaneous detection of multiple fish species from environmental DNA and other samples
We reviewed the current methodology and practices of the DNA metabarcoding approach
using a universal PCR primer pair MiFish, which co-amplifies a short fragment of fish DNA …
using a universal PCR primer pair MiFish, which co-amplifies a short fragment of fish DNA …
Environmental RNA as a tool for marine community biodiversity assessments
Microscopic organisms are often overlooked in traditional diversity assessments due to the
difficulty of identifying them based on morphology. Metabarcoding is a method for rapidly …
difficulty of identifying them based on morphology. Metabarcoding is a method for rapidly …
Analysis of small microplastics in coastal surface water samples of the subtropical island of Okinawa, Japan
Marine plastic debris is widely recognized as a global environmental issue. Small
microplastic particles, with an upper size limit of 20 μm, have been identified as having the …
microplastic particles, with an upper size limit of 20 μm, have been identified as having the …
Environmental DNA metabarcoding reveals and unpacks a biodiversity conservation paradox in Mediterranean marine reserves
Although we are currently experiencing worldwide biodiversity loss, local species richness
does not always decline under anthropogenic pressure. This conservation paradox may …
does not always decline under anthropogenic pressure. This conservation paradox may …
Revisiting the effect of PCR replication and sequencing depth on biodiversity metrics in environmental DNA metabarcoding
Environmental DNA (eDNA) metabarcoding is an increasingly popular tool for measuring
and cataloguing biodiversity. Because the environments and substrates in which DNA is …
and cataloguing biodiversity. Because the environments and substrates in which DNA is …
Environmental DNA as an emerging tool in botanical research
Over the past quarter century, environmental DNA (eDNA) has been ascendant as a tool to
detect, measure, and monitor biodiversity (species and communities), as a means of …
detect, measure, and monitor biodiversity (species and communities), as a means of …
eDNA metabarcoding illuminates species diversity and composition of three phyla (chordata, mollusca and echinodermata) across Indonesian coral reefs
Environmental DNA (eDNA) metabarcoding is an evolving tool that can provide broader
assessments of marine biodiversity than conventional visual census methods. The outputs of …
assessments of marine biodiversity than conventional visual census methods. The outputs of …
[HTML][HTML] Marine health of the Arabian Gulf: Drivers of pollution and assessment approaches focusing on desalination activities
Abstract The Arabian Gulf is one of the most adversely affected marine environments
worldwide, which results from combined pollution drivers including climate change, oil and …
worldwide, which results from combined pollution drivers including climate change, oil and …
Systematic review of marine environmental DNA metabarcoding studies: toward best practices for data usability and accessibility
MM Shea, J Kuppermann, MP Rogers, DS Smith… - PeerJ, 2023 - peerj.com
The emerging field of environmental DNA (eDNA) research lacks universal guidelines for
ensuring data produced are FAIR–findable, accessible, interoperable, and reusable–despite …
ensuring data produced are FAIR–findable, accessible, interoperable, and reusable–despite …