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[HTML][HTML] Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods
Environmental DNA (eDNA) metabarcoding (parallel sequencing of DNA/RNA for
identification of whole communities within a targeted group) is revolutionizing the field of …
identification of whole communities within a targeted group) is revolutionizing the field of …
MiFish metabarcoding: a high-throughput approach for simultaneous detection of multiple fish species from environmental DNA and other samples
We reviewed the current methodology and practices of the DNA metabarcoding approach
using a universal PCR primer pair MiFish, which co-amplifies a short fragment of fish DNA …
using a universal PCR primer pair MiFish, which co-amplifies a short fragment of fish DNA …
[HTML][HTML] TICI: a taxon-independent community index for eDNA-based ecological health assessment
SP Wilkinson, AA Gault, SA Welsh, JP Smith, BO David… - PeerJ, 2024 - peerj.com
Global biodiversity is declining at an ever-increasing rate. Yet effective policies to mitigate or
reverse these declines require ecosystem condition data that are rarely available …
reverse these declines require ecosystem condition data that are rarely available …
Analysis of small microplastics in coastal surface water samples of the subtropical island of Okinawa, Japan
Marine plastic debris is widely recognized as a global environmental issue. Small
microplastic particles, with an upper size limit of 20 μm, have been identified as having the …
microplastic particles, with an upper size limit of 20 μm, have been identified as having the …
Environmental RNA as a tool for marine community biodiversity assessments
Microscopic organisms are often overlooked in traditional diversity assessments due to the
difficulty of identifying them based on morphology. Metabarcoding is a method for rapidly …
difficulty of identifying them based on morphology. Metabarcoding is a method for rapidly …
Assessment of benthic invertebrate diversity and river ecological status along an urbanized gradient using environmental DNA metabarcoding and a traditional survey …
F Ji, D Han, L Yan, S Yan, J Zha, J Shen - Science of the Total Environment, 2022 - Elsevier
Benthic invertebrate diversity is one of the most commonly used bioindicators for assessing
aquatic ecosystem health in river systems. Although an increasing number of studies have …
aquatic ecosystem health in river systems. Although an increasing number of studies have …
Revisiting the effect of PCR replication and sequencing depth on biodiversity metrics in environmental DNA metabarcoding
Environmental DNA (eDNA) metabarcoding is an increasingly popular tool for measuring
and cataloguing biodiversity. Because the environments and substrates in which DNA is …
and cataloguing biodiversity. Because the environments and substrates in which DNA is …
Comparative environmental RNA and DNA metabarcoding analysis of river algae and arthropods for ecological surveys and water quality assessment
K Miyata, Y Inoue, Y Amano, T Nishioka, T Nagaike… - Scientific reports, 2022 - nature.com
Environmental DNA (eDNA) metabarcoding is widely used for species analysis, while the
use of environmental RNA (eRNA) metabarcoding is more limited. We conducted …
use of environmental RNA (eRNA) metabarcoding is more limited. We conducted …
Systematic review of marine environmental DNA metabarcoding studies: toward best practices for data usability and accessibility
MM Shea, J Kuppermann, MP Rogers, DS Smith… - PeerJ, 2023 - peerj.com
The emerging field of environmental DNA (eDNA) research lacks universal guidelines for
ensuring data produced are FAIR–findable, accessible, interoperable, and reusable–despite …
ensuring data produced are FAIR–findable, accessible, interoperable, and reusable–despite …
Environmental DNA as an emerging tool in botanical research
Over the past quarter century, environmental DNA (eDNA) has been ascendant as a tool to
detect, measure, and monitor biodiversity (species and communities), as a means of …
detect, measure, and monitor biodiversity (species and communities), as a means of …