[HTML][HTML] The phylogeny and evolutionary history of arthropods

G Giribet, GD Edgecombe - Current Biology, 2019 - cell.com
Arthropods are the most diverse animal phylum, and their phylogenetic relationships have
been debated for centuries. With the advent of molecular phylogenetics, arthropods were …

Immune memory in invertebrates

B Milutinović, J Kurtz - Seminars in immunology, 2016 - Elsevier
Evidence for innate immune memory (or 'priming') in invertebrates has been accumulating
over the last years. We here provide an in-depth review of the current state of evidence for …

Evolutionary history of the Hymenoptera

RS Peters, L Krogmann, C Mayer, A Donath, S Gunkel… - Current biology, 2017 - cell.com
Summary Hymenoptera (sawflies, wasps, ants, and bees) are one of four mega-diverse
insect orders, comprising more than 153,000 described and possibly up to one million …

Terrace aware data structure for phylogenomic inference from supermatrices

O Chernomor, A Von Haeseler, BQ Minh - Systematic biology, 2016 - academic.oup.com
In phylogenomics the analysis of concatenated gene alignments, the so-called supermatrix,
is commonly accompanied by the assumption of partition models. Under such models each …

Phylogenomics and the evolution of hemipteroid insects

KP Johnson, CH Dietrich, F Friedrich, RG Beutel… - Proceedings of the …, 2018 - pnas.org
Hemipteroid insects (Paraneoptera), with over 10% of all known insect diversity, are a major
component of terrestrial and aquatic ecosystems. Previous phylogenetic analyses have not …

Phylogenomics resolves the timing and pattern of insect evolution

B Misof, S Liu, K Meusemann, RS Peters, A Donath… - Science, 2014 - science.org
Insects are the most speciose group of animals, but the phylogenetic relationships of many
major lineages remain unresolved. We inferred the phylogeny of insects from 1478 protein …

Selecting optimal partitioning schemes for phylogenomic datasets

R Lanfear, B Calcott, D Kainer, C Mayer… - BMC evolutionary …, 2014 - Springer
Background Partitioning involves estimating independent models of molecular evolution for
different subsets of sites in a sequence alignment, and has been shown to improve …

Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy

JP Meier-Kolthoff, RL Hahnke, J Petersen… - Standards in genomic …, 2014 - Springer
Although Escherichia coli is the most widely studied bacterial model organism and often
considered to be the model bacterium per se, its type strain was until now forgotten from …

FASconCAT-G: extensive functions for multiple sequence alignment preparations concerning phylogenetic studies

P Kück, GC Longo - Frontiers in zoology, 2014 - Springer
Background Phylogenetic and population genetic studies often deal with multiple sequence
alignments that require manipulation or processing steps such as sequence concatenation …

Phylogenomics of Rhodobacteraceae reveals evolutionary adaptation to marine and non-marine habitats

M Simon, C Scheuner, JP Meier-Kolthoff… - The ISME …, 2017 - academic.oup.com
Abstract Marine Rhodobacteraceae (Alphaproteobacteria) are key players of
biogeochemical cycling, comprise up to 30% of bacterial communities in pelagic …