Epigenome editing technologies for discovery and medicine
Epigenome editing has rapidly evolved in recent years, with diverse applications that
include elucidating gene regulation mechanisms, annotating coding and noncoding …
include elucidating gene regulation mechanisms, annotating coding and noncoding …
Commonly asked questions about transcriptional activation domains
A Udupa, SR Kotha, MV Staller - Current Opinion in Structural Biology, 2024 - Elsevier
Eukaryotic transcription factors activate gene expression with their DNA-binding domains
and activation domains. DNA-binding domains bind the genome by recognizing structurally …
and activation domains. DNA-binding domains bind the genome by recognizing structurally …
Development of compact transcriptional effectors using high-throughput measurements in diverse contexts
Transcriptional effectors are protein domains known to activate or repress gene expression;
however, a systematic understanding of which effector domains regulate transcription across …
however, a systematic understanding of which effector domains regulate transcription across …
A modular dCas9-based recruitment platform for combinatorial epigenome editing
Targeted epigenome editing tools allow precise manipulation and investigation of genome
modifications, however they often display high context dependency and variable efficacy …
modifications, however they often display high context dependency and variable efficacy …
Sp140L Is a Novel Herpesvirus Restriction Factor
JM Cable, W Wongwiwat, J Grabowski, RE White… - bioRxiv, 2024 - biorxiv.org
Herpesviruses, including the oncogenic Epstein-Barr Virus (EBV), must bypass host DNA
sensing mechanisms to establish infection. The first viral latency protein expressed, EBNA …
sensing mechanisms to establish infection. The first viral latency protein expressed, EBNA …
HerpesFolds: A proteome-wide structural systems approach reveals insights into protein families and activities of all nine human herpesviruses
Structure predictions have become invaluable tools for wet lab science by accelerating the
generation of structure-based hypotheses. While AlphaFold-predicted structures are …
generation of structure-based hypotheses. While AlphaFold-predicted structures are …
Using High-Throughput Measurements to Identify Principles of Transcriptional and Epigenetic Regulators
To achieve exquisite control over the epigenome, we need a better predictive understanding
of how transcription factors, chromatin regulators, and their individual domain's function …
of how transcription factors, chromatin regulators, and their individual domain's function …
Designing Epigenome Editors: Considerations of Biochemical and Locus Specificities
ZB Yagci, GR Kelkar, TJ Johnson, D Sen… - … Editing: Methods and …, 2024 - Springer
The advent of locus-specific protein recruitment technologies has enabled a new class of
studies in chromatin biology. Epigenome editors (EEs) enable biochemical modifications of …
studies in chromatin biology. Epigenome editors (EEs) enable biochemical modifications of …
Bridging bioengineering and epigenetics: from technical innovations to clinical applications
J Jacob, QC van Loosen… - Epigenetics …, 2024 - Springer
Abstract The 7th International Conference on Epigenetics & Bioengineering held in
Amsterdam, The Netherlands was a successful event covering cutting-edge research …
Amsterdam, The Netherlands was a successful event covering cutting-edge research …
High-throughput discovery of regulatory effector domains in human RNA-binding proteins
RNA regulation plays an integral role in tuning gene expression and is controlled by
thousands of RNA-binding proteins (RBPs). We develop and use a high-throughput …
thousands of RNA-binding proteins (RBPs). We develop and use a high-throughput …