Mining and development of novel SSR markers using next generation sequencing (NGS) data in plants

S Taheri, T Lee Abdullah, MR Yusop, MM Hanafi… - Molecules, 2018 - mdpi.com
Microsatellites, or simple sequence repeats (SSRs), are one of the most informative and
multi-purpose genetic markers exploited in plant functional genomics. However, the …

Using nuclear gene data for plant phylogenetics: Progress and prospects II. Next‐gen approaches

EA Zimmer, J Wen - Journal of Systematics and Evolution, 2015 - Wiley Online Library
Single and low copy nuclear genes offer a larger number of, and more rapidly evolving,
characters than the chloroplast and nuclear ribosomal gene sequences that have dominated …

Molecular insights into the interaction of RONS and Thieno [3, 2-c] pyran analogs with SIRT6/COX-2: A molecular dynamics study

DK Yadav, S Kumar, Saloni, S Misra, L Yadav, M Teli… - Scientific reports, 2018 - nature.com
SIRT6 and COX-2 are oncogenes target that promote the expression of proinflammatory and
pro-survival proteins through a signaling pathway, which leads to increased survival and …

Multiple polyploidy events in the early radiation of nodulating and nonnodulating legumes

SB Cannon, MR McKain, A Harkess… - Molecular biology …, 2015 - academic.oup.com
Unresolved questions about evolution of the large and diverse legume family include the
timing of polyploidy (whole-genome duplication; WGDs) relative to the origin of the major …

Quantitative trait locus analysis of agronomic and quality-related traits in cultivated peanut (Arachis hypogaea L.)

L Huang, H He, W Chen, X Ren, Y Chen… - Theoretical and Applied …, 2015 - Springer
Key message SSR-based QTL map** provides useful information for map-based cloning
of major QTLs and can be used to improve the agronomic and quality traits in cultivated …

Selecting Superior De Novo Transcriptome Assemblies: Lessons Learned by Leveraging the Best Plant Genome

LA Honaas, EK Wafula, NJ Wickett, JP Der, Y Zhang… - PloS one, 2016 - journals.plos.org
Whereas de novo assemblies of RNA-Seq data are being published for a growing number of
species across the tree of life, there are currently no broadly accepted methods for …