Ecological genomics of local adaptation

O Savolainen, M Lascoux, J Merilä - Nature Reviews Genetics, 2013 - nature.com
It is increasingly important to improve our understanding of the genetic basis of local
adaptation because of its relevance to climate change, crop and animal production, and …

Using neutral, selected, and hitchhiker loci to assess connectivity of marine populations in the genomic era

PA Gagnaire, T Broquet, D Aurelle… - Evolutionary …, 2015 - Wiley Online Library
Estimating the rate of exchange of individuals among populations is a central concern to
evolutionary ecology and its applications to conservation and management. For instance …

Reliable Detection of Loci Responsible for Local Adaptation: Inference of a Null Model through Trimming the Distribution of FST

MC Whitlock, KE Lotterhos - The American Naturalist, 2015 - journals.uchicago.edu
Loci responsible for local adaptation are likely to have more genetic differentiation among
populations than neutral loci. However, neutral loci can vary widely in their amount of …

Evaluation of demographic history and neutral parameterization on the performance of FST outlier tests

KE Lotterhos, MC Whitlock - Molecular ecology, 2014 - Wiley Online Library
FST outlier tests are a potentially powerful way to detect genetic loci under spatially
divergent selection. Unfortunately, the extent to which these tests are robust to …

Pervasive selection or is it…? why are FST outliers sometimes so frequent?

N Bierne, D Roze, JJ Welch - 2013 - Wiley Online Library
It is now common for population geneticists to estimate FST for a large number of loci across
the genome, before testing for selected loci as being outliers to the FST distribution. One …

Detecting signatures of positive selection in non-model species using genomic data

H Weigand, F Leese - Zoological journal of the Linnean Society, 2018 - academic.oup.com
Understanding how natural selection shapes genetic variation in populations is of
paramount importance in evolutionary biology. Affordable high-throughput sequencing now …

Recent and rapid anthropogenic habitat fragmentation increases extinction risk for freshwater biodiversity

CJ Brauer, LB Beheregaray - Evolutionary applications, 2020 - Wiley Online Library
Anthropogenic habitat fragmentation is often implicated as driving the current global
extinction crisis, particularly in freshwater ecosystems. The genetic signal of recent …

Riverscape genomics of a threatened fish across a hydroclimatically heterogeneous river basin

CJ Brauer, MP Hammer, LB Beheregaray - Molecular Ecology, 2016 - Wiley Online Library
Understanding how natural selection generates and maintains adaptive genetic diversity in
heterogeneous environments is key to predicting the evolutionary response of populations …

The architecture of river networks can drive the evolutionary dynamics of aquatic populations

AT Thomaz, MR Christie, LL Knowles - Evolution, 2016 - academic.oup.com
It is widely recognized that physical landscapes can shape genetic variation within and
between populations. However, it is not well understood how riverscapes, with their complex …

Local interspecies introgression is the main cause of extreme levels of intraspecific differentiation in mussels

C Fraïsse, K Belkhir, JJ Welch, N Bierne - Molecular Ecology, 2016 - Wiley Online Library
Structured populations, and replicated zones of contact between species, are an ideal
opportunity to study regions of the genome with unusual levels of differentiation; and these …