A parallel tempering algorithm for probabilistic sampling and multimodal optimization
M Sambridge - Geophysical Journal International, 2014 - academic.oup.com
Non-linear inverse problems in the geosciences often involve probabilistic sampling of
multimodal density functions or global optimization and sometimes both. Efficient algorithmic …
multimodal density functions or global optimization and sometimes both. Efficient algorithmic …
On the utility of graphics cards to perform massively parallel simulation of advanced Monte Carlo methods
We present a case study on the utility of graphics cards to perform massively parallel
simulation of advanced Monte Carlo methods. Graphics cards, containing multiple Graphics …
simulation of advanced Monte Carlo methods. Graphics cards, containing multiple Graphics …
Feedback-optimized parallel tempering Monte Carlo
We introduce an algorithm for systematically improving the efficiency of parallel tempering
Monte Carlo simulations by optimizing the simulated temperature set. Our approach is …
Monte Carlo simulations by optimizing the simulated temperature set. Our approach is …
An introduction to Monte Carlo methods
Monte Carlo simulations are methods for simulating statistical systems. The aim is to
generate a representative ensemble of configurations to access thermodynamical quantities …
generate a representative ensemble of configurations to access thermodynamical quantities …
Optimized parallel tempering simulations of proteins
We apply a recently developed adaptive algorithm that systematically improves the
efficiency of parallel tempering or replica exchange methods in the numerical simulation of …
efficiency of parallel tempering or replica exchange methods in the numerical simulation of …
Selection of temperature intervals for parallel-tempering simulations
A Kone, DA Kofke - The Journal of chemical physics, 2005 - pubs.aip.org
A heuristic is developed specifying that temperatures in replica-exchange simulations
should be spaced such that about 20% of the phase-swap attempts are accepted. The result …
should be spaced such that about 20% of the phase-swap attempts are accepted. The result …
Non-reversible parallel tempering: a scalable highly parallel MCMC scheme
S Syed, A Bouchard-Côté… - Journal of the Royal …, 2022 - academic.oup.com
Parallel tempering (PT) methods are a popular class of Markov chain Monte Carlo schemes
used to sample complex high-dimensional probability distributions. They rely on a collection …
used to sample complex high-dimensional probability distributions. They rely on a collection …
Towards optimal scaling of Metropolis-coupled Markov chain Monte Carlo
We consider optimal temperature spacings for Metropolis-coupled Markov chain Monte
Carlo (MCMCMC) and Simulated Tempering algorithms. We prove that, under certain …
Carlo (MCMCMC) and Simulated Tempering algorithms. We prove that, under certain …
Conditions for rapid mixing of parallel and simulated tempering on multimodal distributions
We give conditions under which a Markov chain constructed via parallel or simulated
tempering is guaranteed to be rapidly mixing, which are applicable to a wide range of …
tempering is guaranteed to be rapidly mixing, which are applicable to a wide range of …
Simulating replica exchange simulations of protein folding with a kinetic network model
Replica exchange (RE) is a generalized ensemble simulation method for accelerating the
exploration of free-energy landscapes, which define many challenging problems in …
exploration of free-energy landscapes, which define many challenging problems in …